RNA id: TU29633


Basic Information

Item Value
RNA id TU29633
length 3101
RNA type TUCP
GC content 0.49
exon number 3
gene id G23661
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18055470 ~ 18058949 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGtcttcatcatcatcgtcatcgtCCAGCCCCTCCACGTAGGCCTCCGCGTCTGAATCGGGCGCCTCCTTGTCCTCCTTGTCGTAGCCGTCTAGGTAGGTGAGCTGAGGCAGCAGCTTGAAGACATTCTCTCGGTAGTCGTTGAGGTTTGTCACCTCACAGTTGAACAGGTCTAAACTCTTCAGGTTTTCCAATTTTCAGAGGTTCTATTGTGCTGAGGTCTTTGATTTTGTTGCCGCTGAGATTGAGGTGTGTGAGGTTTGGGCATCGCTCTGCCAGAACTTCCAGCCCCCCTGAGATTCTGTTGTCACTGAGCTCGAGCTGCCAGGTGGATGAAAGGAAAGCCAACTTAGAAAATATCTTTCAGAATAACATCCATAtagcaaaaaaatgaaatgtgaatggGATGGCCTacctttttaagtttgtttaatttaggcAGGTTCGCCACCGACGTTAGGCCTACGTTGATTGTGCTTAAAAATTCCAGTTCTTCGAATTCATCTGTGAGGCCCTCGATTTTACCTTCATTTGAACGACAGTTATCTAGAACAAGTTCTTTGACCTGAAAAAagtgaagggggtgggggtcgGGGGGGAGAAAGTTAACACCATCAATATGAAGTAAAATCTAAgtgaaagcaaattaaaatgtgcctTGAGAGAACACATGCAGCCACAAATCGGACCTGTAACAGTCTACCTAGCCGCACATCCCTATGTGCAGAGAGTGCTGGAAGAAGGTCAGACTGTGGTTTGCTGTGGCAAAGTTGAAATTGAGccaaataaatgttgtttccaACTTTTGACACAGAGTGTACTTTGCCTGGGATGAAACACGCATCAGCAGGGCCTCCTGAACAGGAAGTGCTCTTTGGAAGGCATAGTGCTCTCCAGGACAGGGGCCCGGCAAAGCTGGCTTCCAATGGCAATTTTGCCAGAACCGAACATGGTATTAACACCAGTCTCCGTATTGTATTCACAGCCTCCTATTGCAACTAAAAAACACTTAGCCCAACTGTCTGCTCCCAGCTGTATTACTGAAGCGACTCTGAATGCTGCAACTAAACTACAAAGGACATAGAGGGTGTTACTGTCCTGGCACCACGGCACGGGGACCTGTCCCATTCCCCAGCACTCGGCTCCTACACAGCCAAGAAACCATTTTCGTCACAGAATGCTCCATACCTCACACCTGGGTATCAGGCACAAGGAGAGATGTGCACCATTGGCAATGACCATAAGAAATCCTTTGCACCATGGCTACACTTcctggcaagactgagcacctGGGCCACTCATTCTAACTGCGTGAAAACCCTGCTGCACAGCAGGCCGATCTGTTTCAGGTTTAACGAGCATTTCAAAAACGGTTTTCATTTATTTCGTTTCAGCCGGATACATACCTCAATGCAATTATTTAGCAAATAATTTTGACAACCACATTACACCCTGCTGCTGGTCTTGGGAGTCACAGGAGCTCAGCAGGCTGCAACATGTGGACCGGACCCCTCTGCTATGCAATGAAACTTACAGATGGCCACAAAAAGCCTCCTATATACCAACAGAAATGTATTCGAACATAATATTCCAAATATTactcaagaaagaaaataaatagacagCCATCAACCCCtgcagtttttgtgtttgtggtgaGACAGGCATACAAAaggacaggagagagggagagcaaagagcccagcagcacagcacactgataACTATGCCTTCCGAGATGGTCCCATCCACTCAAGGCAGTGTGGCACACAGTGCGTAGCCAGGAGGCTCCTCCAGCCAGGCGGGGAACTCTAGTCCCCATCCTGCCCTCAGAACCACCACACAGCCCAGACTGAAACCATTATCTAAAGCTTTTGCAAGGTTGAGCACTGAACCTCAGGCCCAAGGTTACCCCTGTAGATATTGTGCAGCAGAGGTAACCCACACTGGGCTCCTAGATAAATGCAGACTATCTGAGAGCTGTTAAGATTTTAACAGGGTCCCAGCAGAGCATTGAGAAACTCTCCatgaacatatatattatatatatatatatatatataaataaacacacacacacggacacgtTATACCTACACAATCCTGTAAtccaattaagtaaaaaaaaaaaaattaaattcacaaaaaaaattaagttcaCTCACATCCACAGGAAAACTCGAGTGTCAAACTCCGGCCTGCGGCCCCCACGCGGTGCTCGCCCACGGGCCACCCCTGCAGCGCCGCCCGGCCGAGGCGCAGCGGCTCCCGGAGAAGCACCAGAACCAACCGCGTCCAGTTACATTAGAGCCACGACGCGCCATTTATACCTGCAAACTGTAAACATCAGCCCCGGCGCTGCTGAAAACGCAGGAGTCGCGTCTGCACACCTGAGCCCCGTCACACGAGTGGACAGCCCACAGGTAAACACCCGCACAGCCCCGCACAGCCCCGCCGGCCCAACTGTTCAGCCCCGCAACTTACttcccaacccagcacagcaaTAAACGGCCGCAGCCCAGCCAAAAACACGCCTGCTTTGGTATATCTTTCAACACCacgatttaaaaataaataaatgattgatttGAGCCACCCAGTTCACATTTATAGGGGTAAACCTTTTCATTCAACCAATTTGACAACGCCACACAGACAAAATGGCTGACTACACGGTGTTTTTGAGTGCCGGATACCCCCTGGCAATGCCCACTGTAACACCGAGATTATGGGACTTTCCTCCCAATGAGAGCTCGGTTTAAAGCCCAAAACACGGAGACACGACGCCGTGCGGGAGGCACTGGACGCGCAAAGGAGGGGGCGGCGTGATCGCTGGGTCTGCCGGTGATTGTCCACACCATCAACAGAAAATGCGTTTTGCGCTTTAAAAGGCAATAAATACCTAAAATGGGTTTAATACATCGAGCTAAACACGTCCTATAACCGCAGCGGTTACCACGCCGGCTCATCCGTGTCATTCGCTACAAACGGTCTATTTTCGCCTTTGTTGCTTGATAAAATGGCGGCTTGTCCTAGATACGTCTCGgatccccccccaaaaaaacagcGTTTCGAAAGCGATCACAAAACAGCGCGCCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29596 lncRNA downstream 149062 17906101 ~ 17906408 (-) True G23629
TU29587 lncRNA downstream 232152 17821767 ~ 17823318 (-) True G23624
TU29583 lncRNA downstream 280624 17774551 ~ 17774846 (-) True G23620
TU29539 lncRNA downstream 396912 17658352 ~ 17658558 (-) True G23580
TU29524 lncRNA downstream 472030 17581606 ~ 17583440 (-) True G23566
TU29651 lncRNA upstream 13106 18072055 ~ 18074005 (-) True G23676
TU29680 lncRNA upstream 143510 18202459 ~ 18203906 (-) False AMCG00007418
TU29732 lncRNA upstream 255202 18314151 ~ 18403277 (-) True G23745
TU29805 lncRNA upstream 560336 18619285 ~ 18620731 (-) True G23799
TU29820 lncRNA upstream 653128 18712077 ~ 18714368 (-) True G23813
AMCG00007412 mRNA downstream 7252 18038835 ~ 18048218 (-) True AMCG00007412
AMCG00007409 mRNA downstream 63610 17980242 ~ 17991860 (-) True AMCG00007409
AMCG00007411 mRNA downstream 76948 17962721 ~ 17978522 (-) True AMCG00007411
AMCG00007406 mRNA downstream 97408 17943771 ~ 17958062 (-) True AMCG00007406
AMCG00007405 mRNA downstream 206746 17823894 ~ 17848724 (-) True AMCG00007405
AMCG00007410 mRNA upstream 6477 18065426 ~ 18077532 (-) True AMCG00007410
AMCG00007413 mRNA upstream 54826 18113775 ~ 18115759 (-) True AMCG00007413
AMCG00007418 mRNA upstream 144052 18203001 ~ 18208020 (-) True AMCG00007418
AMCG00007419 mRNA upstream 165382 18224331 ~ 18237308 (-) True AMCG00007419
AMCG00007420 mRNA upstream 206465 18265414 ~ 18275251 (-) True AMCG00007420
TU29265 other downstream 1433565 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 1732819 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 1732819 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 4109405 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 4703397 13351517 ~ 13352073 (-) True G22838
TU29846 other upstream 717411 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 1856197 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 2272564 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 2412162 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 5912722 23971671 ~ 23972665 (-) True G25026

Expression Profile