RNA id: TU29651


Basic Information

Item Value
RNA id TU29651
length 289
lncRNA type intronic
GC content 0.32
exon number 2
gene id G23676
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18072055 ~ 18074005 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taaaaataaaaaacaaacaaaaaaggtccaatgcatttaaaattaaatccaaaacggacaatgtatttgacaaaaaaattataacaaaactaaaccaaaaaacccctaaacaattagtgatttaaaaacaactaaatctttaaaaacagttaagattcattttaaaaggcattttaaaaacaatcatccataaaatggttaaaagatcttggactcgggctccagcagggggaactgaccgtCCCTGGGACACTAAAAAGGTGGTGGGGATGAGGGCTGCAGTAGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29637 lncRNA downstream 9063 17972906 ~ 18062992 (-) True G23663
TU29596 lncRNA downstream 165647 17906101 ~ 17906408 (-) True G23629
TU29587 lncRNA downstream 248737 17821767 ~ 17823318 (-) True G23624
TU29583 lncRNA downstream 297209 17774551 ~ 17774846 (-) True G23620
TU29539 lncRNA downstream 413497 17658352 ~ 17658558 (-) True G23580
TU29680 lncRNA upstream 128454 18202459 ~ 18203906 (-) False AMCG00007418
TU29732 lncRNA upstream 240146 18314151 ~ 18403277 (-) True G23745
TU29805 lncRNA upstream 545280 18619285 ~ 18620731 (-) True G23799
TU29820 lncRNA upstream 638072 18712077 ~ 18714368 (-) True G23813
TU29847 lncRNA upstream 703840 18777845 ~ 18778069 (-) True G23839
AMCG00007412 mRNA downstream 23837 18038835 ~ 18048218 (-) True AMCG00007412
AMCG00007409 mRNA downstream 80195 17980242 ~ 17991860 (-) True AMCG00007409
AMCG00007411 mRNA downstream 93533 17962721 ~ 17978522 (-) True AMCG00007411
AMCG00007406 mRNA downstream 113993 17943771 ~ 17958062 (-) True AMCG00007406
AMCG00007405 mRNA downstream 223331 17823894 ~ 17848724 (-) True AMCG00007405
AMCG00007413 mRNA upstream 39770 18113775 ~ 18115759 (-) True AMCG00007413
AMCG00007418 mRNA upstream 128996 18203001 ~ 18208020 (-) True AMCG00007418
AMCG00007419 mRNA upstream 150326 18224331 ~ 18237308 (-) True AMCG00007419
AMCG00007420 mRNA upstream 191409 18265414 ~ 18275251 (-) True AMCG00007420
AMCG00007422 mRNA upstream 216087 18290092 ~ 18294570 (-) True AMCG00007422
TU29633 other downstream 13106 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 1450150 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 1749404 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 1749404 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 4125990 13945643 ~ 13946065 (-) True G22931
TU29846 other upstream 702355 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 1841141 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 2257508 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 2397106 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 5897666 23971671 ~ 23972665 (-) True G25026

Expression Profile