RNA id: TU29732


Basic Information

Item Value
RNA id TU29732
length 913
lncRNA type read_through
GC content 0.54
exon number 2
gene id G23745
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18314151 ~ 18403277 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACACtgttactgtttatttaaaaactttttaataataattacaaaacaagaaaggtTCACAAGCTTTTTAATCGGCTgtttaacacaacacaacacaacacaactgggGACACGGGGCCGCGCTCGCAGTGGGCGAGGACCAACATTGATCGACACGTCACGAGGTCGCACGCCGCCGACTGTCCCCCGGCTGTGcaggacagacggacagactcTGCTCCAGCGCTCGGTTCTCTGCTCGGCCAAGTGTTCCTGGTGCCGCAGAGAGATGGAAATGGATCCGTCCACACTGGGGAGCGGCGGGTCTCTGGGGTTCACTGGGCTCTTTGAAGCCTTTTCTAGATTCTTCCAGTTACTGAAGAAGGTGGAAAACCAGCAGCACTGGTTTCTCCTGGGGTGGTTCAGATTGTTACGGGTGAGTGTTGACGGGTCCACAGGTTTTGTGAGGTGGGAGGAGGGGACTATGGCCGACTGAGTGAAGGGGCAGTAAACAACTAGGTGTCGATCAGTCGCTTTCcctgctccctctcccccccccacccttcctctccccttctccttctctctacCTACCtaccccccccatctctctctctctcagggcagAACCAGTGAGATGTTCGATTCCAAACCAACACAGAATGTACAGAGTCCTCTGGGGGTGTGGAGGATGGGCAGCTAGGATCAGGGCAGGGTGGATGGGGGAGAAGGGGGTGGCAGTGCCAGagagggtggagagagagagagagagagagagagagagagacacgtgcacccctcccctcccctcgtCACAGGTACTGGGctaattaaaaatgcaggaGACCGTTAAATTAAAACCGCAACACGGAGAGATTGCActgattaacatttaaaacagcagCCCCACCCCCTTCTTCACActcacaccta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29680 lncRNA downstream 110245 18202459 ~ 18203906 (-) False AMCG00007418
TU29651 lncRNA downstream 240146 18072055 ~ 18074005 (-) True G23676
TU29637 lncRNA downstream 251159 17972906 ~ 18062992 (-) True G23663
TU29596 lncRNA downstream 407743 17906101 ~ 17906408 (-) True G23629
TU29587 lncRNA downstream 490833 17821767 ~ 17823318 (-) True G23624
TU29805 lncRNA upstream 216008 18619285 ~ 18620731 (-) True G23799
TU29820 lncRNA upstream 308800 18712077 ~ 18714368 (-) True G23813
TU29847 lncRNA upstream 374568 18777845 ~ 18778069 (-) True G23839
TU29848 lncRNA upstream 375894 18779171 ~ 18779608 (-) True G23840
TU29850 lncRNA upstream 377560 18780837 ~ 18781092 (-) True G23842
AMCG00007426 mRNA downstream 3783 18306877 ~ 18310368 (-) True AMCG00007426
AMCG00007427 mRNA downstream 9833 18300855 ~ 18304318 (-) True AMCG00007427
AMCG00007422 mRNA downstream 19581 18290092 ~ 18294570 (-) True AMCG00007422
AMCG00007420 mRNA downstream 38900 18265414 ~ 18275251 (-) True AMCG00007420
AMCG00007419 mRNA downstream 76843 18224331 ~ 18237308 (-) True AMCG00007419
AMCG00007429 mRNA upstream 944 18404221 ~ 18416448 (-) True AMCG00007429
AMCG00007431 mRNA upstream 24120 18427397 ~ 18427606 (-) True AMCG00007431
AMCG00007432 mRNA upstream 71873 18475150 ~ 18482530 (-) True AMCG00007432
AMCG00007434 mRNA upstream 92913 18496190 ~ 18503391 (-) True AMCG00007434
AMCG00007435 mRNA upstream 167291 18570568 ~ 18573120 (-) True AMCG00007435
TU29633 other downstream 255202 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 1692246 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 1991500 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 1991500 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 4368086 13945643 ~ 13946065 (-) True G22931
TU29846 other upstream 373083 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 1511869 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 1928236 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 2067834 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 5568394 23971671 ~ 23972665 (-) True G25026

Expression Profile