RNA id: TU29781



Basic Information


Item Value
RNA id TU29781
length 363
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G23780
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18586174 ~ 18586536 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTTCTGCAATGCACCATAccttaattacattaatttaatatgaaattaaaagtgaaaatgcTCTGCTCCTGCATTTTCCACGAAGCAATGTACACTAAGGTGGACCTTACTGAGCTTCAGCTTCACACACATGGCACCGATGAAGCTGAAATGCCCGGCACCTGGCCATTAAACAGGCCCTGACAGCTGCAGACCCGGCGGGTTACCTATGAAGTAGTTGATGTAGTCCTTGCGCATCTTGTCCAGGCCCACCTCCAGCAGCATGTGGATGGGCGCCAGGCCGGTGAGCGACACCAAGCCCATCTGGCCCTGGTAGGACCGCAGGACCAGCTTACTGAGGGCGCTGCTGCTGCCCCTGTGGAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU29687 lncRNA upstream 361238 18222183 ~ 18224936 (+) False AMCG00007414
TU29673 lncRNA upstream 381813 18202462 ~ 18204361 (+) True G23696
TU29613 lncRNA upstream 523270 18050143 ~ 18062904 (+) True G23642
TU29602 lncRNA upstream 632899 17952551 ~ 17953275 (+) True G23634
TU29598 lncRNA upstream 643064 17942776 ~ 17943110 (+) True G23631
TU29782 lncRNA downstream 1480 18588016 ~ 18588690 (+) True G23781
TU29783 lncRNA downstream 2330 18588866 ~ 18589068 (+) True G23782
TU29795 lncRNA downstream 37385 18623921 ~ 18625059 (+) True G23791
TU29811 lncRNA downstream 128135 18714671 ~ 18719794 (+) True G23804
TU29903 lncRNA downstream 417811 19004347 ~ 19087472 (+) True G23887
AMCG00007437 mRNA upstream 1898 18575842 ~ 18584276 (+) True AMCG00007437
AMCG00007433 mRNA upstream 15702 18567242 ~ 18570472 (+) True AMCG00007433
AMCG00007428 mRNA upstream 183675 18397347 ~ 18402499 (+) True AMCG00007428
AMCG00007414 mRNA upstream 362589 18217730 ~ 18223585 (+) True AMCG00007414
AMCG00007415 mRNA upstream 369279 18209628 ~ 18216895 (+) True AMCG00007415
AMCG00007438 mRNA downstream 4144 18590680 ~ 18596353 (+) True AMCG00007438
AMCG00007436 mRNA downstream 32772 18619308 ~ 18621844 (+) True AMCG00007436
AMCG00007440 mRNA downstream 35336 18621872 ~ 18623043 (+) True AMCG00007440
AMCG00007439 mRNA downstream 69030 18655566 ~ 18673142 (+) True AMCG00007439
AMCG00007444 mRNA downstream 103475 18690011 ~ 18712246 (+) True AMCG00007444
TU29768 other upstream 15710 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 293836 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 377866 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 384214 18198768 ~ 18201960 (+) True AMCG00007417
TU28988 other upstream 3298214 15286497 ~ 15287960 (+) False AMCG00007352
TU29920 other downstream 464806 19051342 ~ 19056133 (+) True G23893
TU30494 other downstream 2473865 21060401 ~ 21066783 (+) False AMCG00007514
TU30868 other downstream 3695164 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 4602924 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 5605685 24192221 ~ 24194481 (+) True AMCG00007631

Expression Profile