RNA id: TU29782



Basic Information


Item Value
RNA id TU29782
length 675
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G23781
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18588016 ~ 18588690 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATAAACTCCAATTCCTTGAACAGTTGATACACTGGGCTCCGCATGTCTCCACTGGCAATCTTGATGTTCTGCACAGAGTTAATAACGGGTTTGTCTGTTGTTCTGTCTCACAAAATCTCCAGGCGCTGTTGGCCCAGAGAGGCAGAAAGACAGTTCTCTGCTAGTAGTGTAGGCTGAATCATAAAAGACCACAGTAGAAACACAACACGACACCTCTGCTCAAAAATACAGTGCCATAGCATGCCTTACTTCAGCATCAGCTGGGAAGCAAACCAACACCCAGACCGGTCCTCTGGGGCACGCTCACCAGAGTGGCAGTGGAGGCCAGGGGCGGTGTCTGCAGGATGCTCTCCACGCTGCTCCAGGTGAAGTCCACGGTCACGCTGCTCTGGGACTCAATCACTGTGTTCTCCACCACCGTGGAGCCGAACAGGTCAAACTGTGCACAACCTCTTGTTGTCACCTgcagggtcaggggtcaggcatacagtatatacatacacacacacacactgagcttaTCTGGGGGCATAACGGCAAAataattgagaaaataatacaaaacaaaacaactatgAGAATAAAACTGCACTCACAGCGGAAGTGTGATGTCTGCTCTTGTGGGCCCGAGTCAGCTCCTCCATGGTGACATGGGATGACTTTCCCACGGCAGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU29781 lncRNA upstream 1480 18586174 ~ 18586536 (+) True G23780
TU29687 lncRNA upstream 363080 18222183 ~ 18224936 (+) False AMCG00007414
TU29673 lncRNA upstream 383655 18202462 ~ 18204361 (+) True G23696
TU29613 lncRNA upstream 525112 18050143 ~ 18062904 (+) True G23642
TU29602 lncRNA upstream 634741 17952551 ~ 17953275 (+) True G23634
TU29783 lncRNA downstream 176 18588866 ~ 18589068 (+) True G23782
TU29795 lncRNA downstream 35231 18623921 ~ 18625059 (+) True G23791
TU29811 lncRNA downstream 125981 18714671 ~ 18719794 (+) True G23804
TU29903 lncRNA downstream 415657 19004347 ~ 19087472 (+) True G23887
TU29906 lncRNA downstream 422024 19010714 ~ 19014831 (+) True AMCG00007452
AMCG00007437 mRNA upstream 3740 18575842 ~ 18584276 (+) True AMCG00007437
AMCG00007433 mRNA upstream 17544 18567242 ~ 18570472 (+) True AMCG00007433
AMCG00007428 mRNA upstream 185517 18397347 ~ 18402499 (+) True AMCG00007428
AMCG00007414 mRNA upstream 364431 18217730 ~ 18223585 (+) True AMCG00007414
AMCG00007415 mRNA upstream 371121 18209628 ~ 18216895 (+) True AMCG00007415
AMCG00007438 mRNA downstream 1990 18590680 ~ 18596353 (+) True AMCG00007438
AMCG00007436 mRNA downstream 30618 18619308 ~ 18621844 (+) True AMCG00007436
AMCG00007440 mRNA downstream 33182 18621872 ~ 18623043 (+) True AMCG00007440
AMCG00007439 mRNA downstream 66876 18655566 ~ 18673142 (+) True AMCG00007439
AMCG00007444 mRNA downstream 101321 18690011 ~ 18712246 (+) True AMCG00007444
TU29768 other upstream 17552 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 295678 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 379708 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 386056 18198768 ~ 18201960 (+) True AMCG00007417
TU28988 other upstream 3300056 15286497 ~ 15287960 (+) False AMCG00007352
TU29920 other downstream 462652 19051342 ~ 19056133 (+) True G23893
TU30494 other downstream 2471711 21060401 ~ 21066783 (+) False AMCG00007514
TU30868 other downstream 3693010 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 4600770 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 5603531 24192221 ~ 24194481 (+) True AMCG00007631

Expression Profile