RNA id: TU29811


Basic Information

Item Value
RNA id TU29811
length 1795
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G23804
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18714671 ~ 18719794 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCAGCTCAGTATATGAAACCCTCTTCTCAGGACAGAAAGAAATTGCAGTAAATCAACGATGTGCAGTAGCACCCAGGCACCGCTCACTGGCTCTCGAATCATACTTCCCCATTCctgtttattggtttgttttgttttccatttcaattcaTGTGCACAGAATACAGTATTTCAAaatcataatatttttaaaaacaacaacaggaatgAGAATCACCAGCACATGCAAAAACTACATATGGAAttaggggggagggggggtgagaGGCAGGGATGGTAATGTATAAACAGATTCAACACAACAACAGAAGCAAATAAACTAAACGAACGAATGCACCAAGAAGACACTCGTGAAACTGTCTTTCTGCAGAGCCGGCTGAGCAGCAGGCAGTGGCAGTGCCCTCCGTTTCCACACGTCATAAGCACTGCAGGCCAGACAGACTGACGGACGCATtcaagacacagagacagacggacagGCCCCGCCGTCCAGCAACACTCCAGTCACTCCATGGGCAGGAGCTGAACTGCAGTGCTGCACACCCCCCCACGCTGCAGGAGAGTTTATACTAGCCTCACAGCTGCACCTGTGGCCTCTCTCCTTATAATGCAGAGGACTGGGCGTTAAAACAGTGTCTCTGTATGACAGATGTGCTGAAGCAGCTCTTAAGTCACTTGTGATTGCTCGTTTGACAACACAATCCACCCCCTGCCAGTGCTGCAGGAGGTCCTCCCAGCCTGGCCTGGACCTCAATCCCTCCCTGTAGTCACAGGAACTCCCATCACTCAGTGATCATatgatcataatcataatcactATACAGCAGTGTGGAGTCATGGTCAGTGCTCTGGTCCTGAGCAgagggttcagtcccaggtgtgGGACCCATGAGCAAGGCACTGtgcctagattgctccagtacaaacccagtggtataaatgggtaattgtatgtttaaataatgtaataaatgaatgtgaatCAATACTGACCTGTTCAGTTTTAAACTAGGCACTACGTGGTAGCAAAGCAATCAACTTTAagtctttaatacattttgccaGTTGTCAGGCATGGTTTCTTTTGCCCTGTCTGGAAAGCAGCAGAGAGCACGCCCAGGAGACACTGGCAGCAGATGGGCTGAGCTGAGGGGAGCGGCTTCACCTTTCTGTTAATTGTGTGAGCCTCTGTAACCTTTTGCCCAGCTCCTGCAAAGCAGCAGCGCTTCTACCTCCCTGTatctcagcagcacagcagcTCTGAAGCTATGACCAAACGGTGACCGAAGCTATCCATGCAGTATTCATGAGCTGAACTGCGATCTGGTCCCAGAGACGGACAGAGCCTCCCCCAGGGGTCAGGCCACCATGCAGACCGCTTCAGTGCACCACTCCCAGCACCCCTGTGCCGTGTCTATGCATCAGCCTGCATAGCATGGCTGCTGCGTTTACAAAGTGACAACACCTCTGTAACAGCCACAACAGGACAATAGGGTAGGCGctccattaaaaaacaagaactaaACAATGAACGAACAGTCCCCTCTGCTACTGTCATGGCACGTCATGTATCTTTCAGTAGCGAGTCACATGGTGCCATTGTCTTCTTATGCCATGCGATACACAGACAGATCTTACGGTCGGTGTCAATTTTCACAGCTGAGCCCCTGGCGCCACACTGACACAATGGGGTGACACAGGCACTGAGTGGTGGGAGGTGTAGAGAGTGTCTcctcaaaatatatatgaatatgcttatatatgtatgtgtgtgtttatatacacacacatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29795 lncRNA upstream 89612 18623921 ~ 18625059 (+) True G23791
TU29783 lncRNA upstream 125603 18588866 ~ 18589068 (+) True G23782
TU29782 lncRNA upstream 125981 18588016 ~ 18588690 (+) True G23781
TU29781 lncRNA upstream 128135 18586174 ~ 18586536 (+) True G23780
TU29687 lncRNA upstream 489735 18222183 ~ 18224936 (+) False AMCG00007414
TU29903 lncRNA downstream 284553 19004347 ~ 19087472 (+) True G23887
TU29906 lncRNA downstream 290920 19010714 ~ 19014831 (+) True AMCG00007452
TU29916 lncRNA downstream 328292 19048086 ~ 19050603 (+) False G23891
TU29914 lncRNA downstream 329455 19049249 ~ 19112325 (+) False G23891
TU29915 lncRNA downstream 329455 19049249 ~ 19050603 (+) False G23891
AMCG00007444 mRNA upstream 2425 18690011 ~ 18712246 (+) True AMCG00007444
AMCG00007439 mRNA upstream 41529 18655566 ~ 18673142 (+) True AMCG00007439
AMCG00007440 mRNA upstream 91628 18621872 ~ 18623043 (+) True AMCG00007440
AMCG00007436 mRNA upstream 92827 18619308 ~ 18621844 (+) True AMCG00007436
AMCG00007438 mRNA upstream 118318 18590680 ~ 18596353 (+) True AMCG00007438
AMCG00007446 mRNA downstream 30676 18750470 ~ 18790088 (+) True AMCG00007446
AMCG00007447 mRNA downstream 91061 18810855 ~ 18814928 (+) True AMCG00007447
AMCG00007450 mRNA downstream 155761 18875555 ~ 18896629 (+) True AMCG00007450
AMCG00007451 mRNA downstream 219471 18939265 ~ 18972204 (+) True AMCG00007451
AMCG00007452 mRNA downstream 287756 19007550 ~ 19014899 (+) False AMCG00007452
TU29768 other upstream 144207 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 422333 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 506363 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 512711 18198768 ~ 18201960 (+) True AMCG00007417
TU28988 other upstream 3426711 15286497 ~ 15287960 (+) False AMCG00007352
TU29920 other downstream 331548 19051342 ~ 19056133 (+) True G23893
TU30494 other downstream 2340607 21060401 ~ 21066783 (+) False AMCG00007514
TU30868 other downstream 3561906 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 4469666 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 5472427 24192221 ~ 24194481 (+) True AMCG00007631

Expression Profile