RNA id: TU29820


Basic Information

Item Value
RNA id TU29820
length 2292
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G23813
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18712077 ~ 18714368 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCCCTTGAGCGCTGGAGACGTAAACAACAGGTGAAGCGTAACCTGGACTGAAAACTCGCACACACGctcgcactcacacacacacccactcacacacacacaccccgacCCGATTGACTCACCTAATGCAGCCTTGTATCGAATGATTGTCAATGTGTTATTGCTTCTAGAGTACATGTTCTGCATACCAAAAGTTGTGAAGCTGTTAAAACCACATTTTGGACCTGATTTAGATGTGATTTTGATCCGTTTTTTATCTTGGGTCCCTTGCCTCTCGGCcaaaaaagcagaacattttagAAAGGCTATTGACTGGAAGCTTAAAGGACCTTATGGTGCAAGTGGgtactgtcctgtcctgtcacTACAGCGTCCTGTCTGAGAGCAGCCAGTCTTCAGAGGTAAGGCAGTGCAGTGACGCCAGCAGTACACTCTGGCTGGAGTCTGTGGTAGACTGACTGGGAATTCAGAGTTACTGTGAAAAGCTGCAAAAAACAACGAGTTAAGTCATCCGAGCAGCATTCCCCTTAGTGCGCCCACTGCGTTGACTGCAGTATGTAGAGGTGCGTAGGGTAACACGGTGGGCTTCCACTGCGGGAATCCGGGGGAAGACTAATGGCAAACTGCACTCGAGTTTTAACACAACTGGCCCACAGGAGGAAAGGGTCTGTCATGCTGCAGGCGCTTACACTGGGATTTCACATTTCGGTCatgcttttctgtcttttattttattttatatttcagcgTTGCAGCTTTTCACTAACAAAATTCACTATCACTaccgtaaataaataaacaaattcaataaatacatacatcataaagaaatacataattgataatacaaaaacaaaacaggaagacccccccaacccccacctcATAGCAGTATCTTTAATAtgtaaaccattaaaaacaaatacagaagtCTAACCCCAGCTAGTTCCAGTATGGGTTTAAAATCAGTAAATAGGATCATTTCTTACTATTTCTTACAATTTAATCATGCTCAGTCACCAGGGGCTGGTGTCAGTGTGAAGGAAGAGAgtgggacagggagagggggggagagagagagagagagagagggagggaggttagggagagacagagggacggAGGGATAAACAGGTACCACAGCAGCTGGGATCTGTGGCAAAGTATTCGCTCAGACTGGGAGATGCCACAGGCACAGTCCCATGCAGCAGTGTCGTTCAGTCCTGGAGCAGCGGGATCGCACAGTCCCTGCCCCTCCGGCATCATGCCTCCGAATTCAGTCCCATATCGTCTCCAAGGCATAAATCCACGCTGACCTTGCTGTGGCCCCTCAACTCCCGGAGAGAGAGAGCCGTGCTGACAGACTGTCAAGTCTGCCACTGCTAACCCCGCCTGTGCCTCCAGCTGCTCCTGGtcctgtctgtttgtttgtttagaagGGCAGCTCAGGTGAGAGACTCTATCCACCGCCCCGCAGAGCCTCCATTACTCCCCAGCTCTAAACTTGAGTCCATTTAGTAGCTGCTTCCAGAAACACTTTACTCTGCCTttccaaagaaaacagaagaagaatCACAGTAAAAAGTACATAGCTGGTGTTTGTTCCTCCAGGCCCTGACTCTGGATCAACGAGGGAGCGTCTTTCACTAACTCTGCGATCAGCTCCAGCGGGTCTGTCCTGACGCCTCCTTCTGTGCGGTCAGGCAGGGGATGAGGACAGAAGAAGTAAAGAGCAGTGTCTCGCCCCAGGGGTGCTCTCCACATCGCCTCAGTCTTACACAGGAATAAAATCGTCATGCAGCAGTacagggagatggagagagagggagagaggggggggggagggacaGACTGCAATATTCTGCTCCAGTAATTTCTTTTGAaccttgttatttatttgtaattgatgtgtttttgttcgttctttttatatatatagatatatatacatacaccggcatttgttattattattgtccttCGCACACAGTTTCTTGCCTCCGCTCTGTCCCCTGTGTGTGCTAGGGTCACTGCTGCTAGAGATAGCTGGCTGGACAGTCCAGGTGTCCAGCTGACTGACCGAGGGCAGCAGAGCAGCGGGGGCCAGTGCGGGCCATCCTCTACGACTGGGTGCCGGGCGGGGCGTCCTCGGGTGGCGGGGAGTGGGCAGGGCTGTGGCGGACGGGCAGCAGGTCGTAGTGGCTGGGGATGTGGCTGTTGCGGGGCAGGTCGTAGGGGTTCTGAGGGTAGCTGGGCAGCACTCCGTTGGCACCCTGCAGCAGACTCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29805 lncRNA downstream 91346 18619285 ~ 18620731 (-) True G23799
TU29732 lncRNA downstream 308800 18314151 ~ 18403277 (-) True G23745
TU29680 lncRNA downstream 508171 18202459 ~ 18203906 (-) False AMCG00007418
TU29651 lncRNA downstream 638072 18072055 ~ 18074005 (-) True G23676
TU29637 lncRNA downstream 649085 17972906 ~ 18062992 (-) True G23663
TU29847 lncRNA upstream 63477 18777845 ~ 18778069 (-) True G23839
TU29848 lncRNA upstream 64803 18779171 ~ 18779608 (-) True G23840
TU29850 lncRNA upstream 66469 18780837 ~ 18781092 (-) True G23842
TU29851 lncRNA upstream 66846 18781214 ~ 18785137 (-) True G23843
TU29867 lncRNA upstream 115497 18829865 ~ 18830087 (-) True G23854
AMCG00007442 mRNA downstream 78108 18624723 ~ 18633969 (-) True AMCG00007442
AMCG00007441 mRNA downstream 98131 18597275 ~ 18613946 (-) True AMCG00007441
AMCG00007443 mRNA downstream 121950 18584799 ~ 18590127 (-) True AMCG00007443
AMCG00007435 mRNA downstream 138957 18570568 ~ 18573120 (-) True AMCG00007435
AMCG00007434 mRNA downstream 208686 18496190 ~ 18503391 (-) True AMCG00007434
AMCG00007445 mRNA upstream 247 18714615 ~ 18733019 (-) True AMCG00007445
AMCG00007449 mRNA upstream 77210 18791578 ~ 18810571 (-) True AMCG00007449
AMCG00007448 mRNA upstream 101483 18815851 ~ 18823606 (-) True AMCG00007448
AMCG00007457 mRNA upstream 306352 19020720 ~ 19023092 (-) True AMCG00007457
AMCG00007455 mRNA upstream 309530 19023898 ~ 19025640 (-) True AMCG00007455
TU29633 other downstream 653128 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 2090172 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 2389426 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 2389426 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 4766012 13945643 ~ 13946065 (-) True G22931
TU29846 other upstream 61992 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 1200778 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 1617145 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 1756743 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 5257303 23971671 ~ 23972665 (-) True G25026

Expression Profile