RNA id: TU29848


Basic Information

Item Value
RNA id TU29848
length 438
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G23840
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18779171 ~ 18779608 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTATAAgggcacagatctgcagaatactactgatcccattggtggagccgtgcATAACTGAAGACGAGACGACGTAATTCGGGAGATGACTATTATAAGGCCAGCTTCTGTATGGAAGTAGTCAAGCAGTGTCTCTGAATTGGCTGGGCTTGTGTGACAGGGGCTGATGGCCTCCTCAGCACAGTGTGGTTCTCCCTACAGACACGAGGAGGCTTAGTAAGGCAGCAGGCAAGTACCgattcacacacaaacactgcggCCACAAGGGTGTACCTGGTGGAGCCGTGGCAGTGCTGTGTGGCGATTTTGGGAGAGGGGGGTGAGAGGGCCATGGCAGGGCAGTGGGGGGAGAGAGCAGACTGCCCCACCCCAAGGCCGGCAGAGGTGGAGCAAGATGAGGCAACGCCCTCCTCTACTGACGGGCTGCTCTTCAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29847 lncRNA downstream 1102 18777845 ~ 18778069 (-) True G23839
TU29820 lncRNA downstream 64803 18712077 ~ 18714368 (-) True G23813
TU29805 lncRNA downstream 158440 18619285 ~ 18620731 (-) True G23799
TU29732 lncRNA downstream 375894 18314151 ~ 18403277 (-) True G23745
TU29680 lncRNA downstream 575265 18202459 ~ 18203906 (-) False AMCG00007418
TU29850 lncRNA upstream 1229 18780837 ~ 18781092 (-) True G23842
TU29851 lncRNA upstream 1606 18781214 ~ 18785137 (-) True G23843
TU29867 lncRNA upstream 50257 18829865 ~ 18830087 (-) True G23854
TU29883 lncRNA upstream 87159 18866767 ~ 18867479 (-) True G23867
TU29891 lncRNA upstream 121757 18901365 ~ 18901597 (-) True G23875
AMCG00007445 mRNA downstream 46152 18714615 ~ 18733019 (-) True AMCG00007445
AMCG00007442 mRNA downstream 145202 18624723 ~ 18633969 (-) True AMCG00007442
AMCG00007441 mRNA downstream 165225 18597275 ~ 18613946 (-) True AMCG00007441
AMCG00007443 mRNA downstream 189044 18584799 ~ 18590127 (-) True AMCG00007443
AMCG00007435 mRNA downstream 206051 18570568 ~ 18573120 (-) True AMCG00007435
AMCG00007449 mRNA upstream 11970 18791578 ~ 18810571 (-) True AMCG00007449
AMCG00007448 mRNA upstream 36243 18815851 ~ 18823606 (-) True AMCG00007448
AMCG00007457 mRNA upstream 241112 19020720 ~ 19023092 (-) True AMCG00007457
AMCG00007455 mRNA upstream 244290 19023898 ~ 19025640 (-) True AMCG00007455
AMCG00007454 mRNA upstream 270464 19050072 ~ 19056271 (-) True AMCG00007454
TU29846 other downstream 1533 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 720222 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 2157266 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 2456520 16320997 ~ 16322651 (-) False AMCG00007365
TU30203 other upstream 1135538 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 1551905 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 1691503 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 5192063 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 5486216 24265824 ~ 24267921 (-) False AMCG00007637

Expression Profile