RNA id: TU29883



Basic Information


Item Value
RNA id TU29883
length 463
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G23867
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18866767 ~ 18867479 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aatgctttgctagatacctcggttgtaacgagtggttatttcagtcaaagttgctcttctatcagcttgaatcagtcggcccattctcctctgacctctagcatcaacaaggcattttcgcccacaggactgccgcatactggatgtttttcccttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaactgagcagattgtgaaatactcagaccggcccgtctggcaccaacaaccatgccacgctcaaaattgcttaaatcacctttctttcccattcagacattcagtttggagttcaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtacatACACTGAGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU29867 lncRNA downstream 36680 18829865 ~ 18830087 (-) True G23854
TU29851 lncRNA downstream 81630 18781214 ~ 18785137 (-) True G23843
TU29850 lncRNA downstream 85675 18780837 ~ 18781092 (-) True G23842
TU29848 lncRNA downstream 87159 18779171 ~ 18779608 (-) True G23840
TU29847 lncRNA downstream 88698 18777845 ~ 18778069 (-) True G23839
TU29891 lncRNA upstream 33886 18901365 ~ 18901597 (-) True G23875
TU30035 lncRNA upstream 612535 19480014 ~ 19481087 (-) True G23982
TU30064 lncRNA upstream 712302 19579781 ~ 19579984 (-) True G24003
TU30182 lncRNA upstream 924222 19791701 ~ 19797576 (-) True AMCG00007481
TU30194 lncRNA upstream 1000379 19867858 ~ 19912916 (-) True G24102
AMCG00007448 mRNA downstream 43161 18815851 ~ 18823606 (-) True AMCG00007448
AMCG00007449 mRNA downstream 56196 18791578 ~ 18810571 (-) True AMCG00007449
AMCG00007445 mRNA downstream 133748 18714615 ~ 18733019 (-) True AMCG00007445
AMCG00007442 mRNA downstream 232798 18624723 ~ 18633969 (-) True AMCG00007442
AMCG00007441 mRNA downstream 252821 18597275 ~ 18613946 (-) True AMCG00007441
AMCG00007457 mRNA upstream 153241 19020720 ~ 19023092 (-) True AMCG00007457
AMCG00007455 mRNA upstream 156419 19023898 ~ 19025640 (-) True AMCG00007455
AMCG00007454 mRNA upstream 182593 19050072 ~ 19056271 (-) True AMCG00007454
AMCG00007456 mRNA upstream 190778 19058257 ~ 19074146 (-) True AMCG00007456
AMCG00007462 mRNA upstream 219723 19087202 ~ 19101380 (-) True AMCG00007462
TU29846 other downstream 89129 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 807818 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 2244862 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 2544116 16320997 ~ 16322651 (-) False AMCG00007365
TU30203 other upstream 1047667 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 1464034 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 1603632 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 5104192 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 5398345 24265824 ~ 24267921 (-) False AMCG00007637

Expression Profile