RNA id: TU29903


Basic Information

Item Value
RNA id TU29903
length 2753
lncRNA type read_through
GC content 0.42
exon number 2
gene id G23887
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19004347 ~ 19087472 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctgtgtgtgtgtgtgtgtgtgtgtgtgggggggggtttacaGCGCAGCTTCTTGGCCACAAGGAAGTGAagattttgctttgtttttgcatatttgGAGAGTGAGGGAAAggaacagtatatatatattacacacacacacatacatttaaaaaaagacccCCCCGCCCCAAAAAATGAATAgctttaaatcaaaatgatgaAGCCTCACTTGGTTCCTGCactggtgtgagtgtgtgtatagaaCATGGGGGATTTGTGGTCAGGCCTTTCCTGTACCACTGTGCCCTCTCCACATCCACTGATCAATGGTACACAAGAGTGGCACATACGCACAGGACAGAACAGCGGACCATTACAGGCCCGGTTCAGACTCTGATTGACAGGTAAGGGGCAAATCGCATCTCTTACTACCACTGACATCTGTAGCAACAGGGAGGGTTCAATAATTGAGTCTAAGAGCTGCCTGTTGACATGACACGGACAGTGCAGACAGCAGCACGACAGCCTGGTTCACTGGCACCCGACACCCTCGCTCTACATTCACTGGGGGAGAGAAAATGGGGAtggaggggaaataaaaaaaataaataaataaaaaactcatAACAGTCCAGTCCCTTCAGCATGTAAATGCAGTCAAAGGAGGCAATGCCTGGACTACCATCTTTAAATTCTTCCTTTCTCACATAGTCCTGGAACCGTTAGGCAACACTGAAGGGGGACACACGAGAAGTCCAAAGGACAGCACAGTCTTCAATCTTCTTCCTAACCGAGTAGAGAGCTGTAGGCTAAAGAGGTACTCTACACTTGAGTTTCAACTGCACCAGAACAAAGgccttaaaacaaaacaaatgaaaacacagaagatGGGTTTAAACCACAGTGATGAAGCCTGCTTTGCTGGTGCTACAAAAACGCCTGCCTTAGAAAGTAACAGCTCCTCCATCGTGCTCACACAGCCAGAAGGCAGAGGTAAGAGCTGACAAAGCCTTGCTACATTTAGGTTTTTAtaatacttgttttaaaaacacacaaaaaaagtatatGGGTCAACATCTTCTGCATTTACTCCCCAGTTCCGGTACCTGCAAGCAAAATATAGtttccatttatatataaaaaagaaaaccttctgtggaccccccccccccacacacacacactacagataGGAAAAGAAACAGGCAGTGCCTGCACAGAGAATTTCCAGGTGCATTTAAAACCTCTTGGTAGAGaatttgtatatatagatattcaaaataaactggAGCATTAATGTTTGATCAGCCTGTCCATGATTGAGCTGCGGCTAATAGAAGGGGGGCGTACAACGTGTCAATCGCACACTGTGTCTTCAAATTTGAATCTGTGCAAAATCAGGCGACATGGTgaacaggaggaggagggatggTAAAGTGAAGCGTCGAAGAAACGCAGCCGAGATGAGCCAAAGCAGGTTGAAAACGTACAAgtttgtaaaaactaaaaacacgtAGATGGAACATGTTAGGACGAGTGGCAAAGAAACAAGAACGGGAGGCAAGCACATCCACGGCGCTCAGTCTTGTGGTGCTTGTTGCTGCTACAAATGTTACTGTACGAAATGGGTCGTCACACAACATTCAAGCTCTGGCatttaaaatcctttaaaaagGGAGAAAGCAGGGGGCTGGGATGGTGCTTCTTGGCCCAGTAGACATAAGCAATTACTATGGTCTAAACACCCCactgtcccccccaccccaccctgaTAATGACCGTCTCCAATCATGATTTTTATAgaactggttttgttttttttaactacagtggaatatttaattacagaaaccatataaatgcatgttttatgaaCTGACCGACTAAAActagatttttcatttttttaaacaaatatacaaaatgcagGCAGACAAAGCAGGAAAACagccattaaaatacataatgaggataggggggagaaaaaaaaaaaaaagtgactaTTACCAGAGTATCTATGAGACTGCCTCAACTAATAAGGAATGCAtaatgaaagtctacactaGAGTAagtaaaaagtttaaaaacctgaacagaagagaaaattaaaaaatatatattttttactggCCATTCCTGTTGAATCGAGAGCCTGGAGTCAGCAAGTGGCAACAGTCCCACGTGGAGCACCAAAAAGTTTGTGTCCTTTATCTTCTTTGCAACGACATCTTCAGTTAATACAGGCTGAAACTGCTGCTGGCAAAAACCGAACACTTCTGAAACAGTCCATGTGACGCGGAGAGAGAAAGTAAcgatcaaaaataaaatcatgaaattCACTCAAGAAAGCCTGTCAATGGATCCACCCTGGTCTTGCCTACAGTATGCATggagtatatttatatatatatttataaattctaTAATCAGGAGATCAGTTGCTTCAAAAACCTTGGAAGGGTTTTGACTTTTTCCTCCCCTCGTTACCAgatctcaaaaaaaaaaaaaaaaaaaaaaaaaaccttaaaagcaaaatgtggggttaaaattaaatttaaaaattcaaCAGTAATGGCAACACTTTTTAGTTGTAATCCAAAAGGGTTCTGCGTGTCTTTTctggttggttggtttgtttttcgcTTTACTTCCGTTGTTTCCTCTCCATTTGTTTAGGCCATGCCTGCCCTCCCTGCCCGGGGCTTCAGTCTGGGGGCAGCAAGTCGTGCAGGCGAAACCGCTCCCGGATATGAGGTCTCACGTCCTCGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29811 lncRNA upstream 284553 18714671 ~ 18719794 (+) True G23804
TU29795 lncRNA upstream 379288 18623921 ~ 18625059 (+) True G23791
TU29783 lncRNA upstream 415279 18588866 ~ 18589068 (+) True G23782
TU29782 lncRNA upstream 415657 18588016 ~ 18588690 (+) True G23781
TU29781 lncRNA upstream 417811 18586174 ~ 18586536 (+) True G23780
TU29917 lncRNA downstream 18616 19106088 ~ 19112325 (+) True G23891
TU30099 lncRNA downstream 541832 19629304 ~ 19630607 (+) True G24030
TU30112 lncRNA downstream 563184 19650656 ~ 19650874 (+) True G24040
TU30167 lncRNA downstream 712013 19799485 ~ 19799952 (+) True G24083
TU30169 lncRNA downstream 715381 19802853 ~ 19803466 (+) True G24085
AMCG00007451 mRNA upstream 32143 18939265 ~ 18972204 (+) True AMCG00007451
AMCG00007450 mRNA upstream 107718 18875555 ~ 18896629 (+) True AMCG00007450
AMCG00007447 mRNA upstream 189419 18810855 ~ 18814928 (+) True AMCG00007447
AMCG00007446 mRNA upstream 214259 18750470 ~ 18790088 (+) True AMCG00007446
AMCG00007444 mRNA upstream 292101 18690011 ~ 18712246 (+) True AMCG00007444
AMCG00007458 mRNA downstream 55661 19143133 ~ 19167032 (+) True AMCG00007458
AMCG00007464 mRNA downstream 92323 19179795 ~ 19182234 (+) True AMCG00007464
AMCG00007466 mRNA downstream 103274 19190746 ~ 19194345 (+) True AMCG00007466
AMCG00007465 mRNA downstream 131318 19218790 ~ 19236741 (+) True AMCG00007465
AMCG00007467 mRNA downstream 215637 19303109 ~ 19338989 (+) True AMCG00007467
TU29768 other upstream 433883 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 712009 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 796039 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 802387 18198768 ~ 18201960 (+) True AMCG00007417
TU28988 other upstream 3716387 15286497 ~ 15287960 (+) False AMCG00007352
TU30494 other downstream 1972929 21060401 ~ 21066783 (+) False AMCG00007514
TU30868 other downstream 3194228 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 4101988 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 5104749 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 8996350 28083822 ~ 28094741 (+) True G25822

Expression Profile