RNA id: TU29914


Basic Information

Item Value
RNA id TU29914
length 3897
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G23891
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19048086 ~ 19112325 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CgattttattaaattagatGCTCTATAAAACACTGCAGATGTTGTAACCATTTGCACTCTTGATTTCCAATTgttgtaacactttatattcGCTAAGcaacatttcataaaatgttaggaacccccccccccccaaaaaaaaaaaactacgtTAATGACGGCCTGCATGATGAGCTGACTCGCTCAATGAAGACAGATTGCCCAATGTACTTCCAGCAAGCCTACAGATGTGTTGAATGTACCAgtatgagaagaaaaaaaacacacaaaaacccacagccaacccccaccccccctttaaTGTTGCATTAATATTGAACACAGAATATGAATACAAACTAAAATCTTTATGCACACAAATATCGATTACAGATCTTCTCCAGATGCACTTACAAAGCAACTCTCATCAACACACCAGCCAGTTCAGAATACCTTCCATCATTTCAGTTATTCAGTTACGTCCCATTCCCTCCGACTGAAGCCCTGCACATTCACGTCTCATTCCAACCAGTCTGATGTGCACCTGTGAAGCAACCCTTACAAGTGCTTTGCGATCTAGTGTCTGCTTAGGCTGCCCTACCTTCTTATAATCGTGAGCAGTAATAATTGGTCTTATTTGGCGACCCAGGCTATAGTAAAGATGCAGTATCCCTTTCTGCAGAACTTTAAATGCTGTCcacaggaaaaggaaaataccCATTGTTTGCATAGAagatcagatttattttcttgataatGCAAAAGCTACCAAACAGAGTAATACTATTCAGTCATTCCATCACAAGTCcccctgttatttatttatatatatatatatatatatatatatatatatatatatatatatatatatatgcatgcaagGGAGTTGCCTTAGTATGTAAAAGCCAGGGAATCTCTTGGTAGTGTTGGCTGCAATGGTGTGAAGATCAATCACACAGGAGGTCTTATTCCCGCATGGATTTCTATCCAACTAAACTAATATTGCTGCAGTTTATTGAGCGGTCTCGGGAGTCCGACGTCATGGTTCAACTCAACACACATGATGGCATCCTCGTAGAAGACATTTTGCACCATGGACTGGAGCCAAACaacaaactaagaaaaaaacTGATCTGAGTAACACAGCCCTGACCACAGTCTCAGTGCCCGAGTGAACAGCCTCCTGCTCCGTTGGGTGCTAAGGGCCACAGCAAGCTCTGGTAAAAACAGACCACACCCAGGCCGCTACAGCCTCCAAACCATGACAATGTgctcttatttatatatacataaataacatacatatatataacatttctatcctgaaaTGAGTATTGTGTCTTCATAAAGGATTGCAGAAAAGGATAAAACAAACTCCAGACATAAAAAAAAGGGGGGTATGATCATCTCATTGTTAAGAGCCCACGATTGTCCAGGAAGCTTGGGCCAGTGAAAGGAGTAGGTCCATTGTCCATTGCTGCCTGCCCTCTTCTTTGAGCATGCAACAGCTCCTTCCTCAGGGCTCAGCTCTCTCTGCTCCACACTGAGCAGACACAAAACCAATCCTTCATctgatgtaatatatatatatatatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacccttcatTTCTCATGGAATACATTCTAATTATATTAAGAAAATCtcaaattagaaataaatttACACTTCTAGGTACTCATCCTTTAGTATAACAGTGGTGGACAGGACCCTAGAaagtacaaaatatacacaaggAATATACAGCTGACATTTTCAGAAATTCATCCCATAACCTAGCATTTCTTCACAACACCCAATCCTACTAGCCCTACTAGACACGGtttataaagaagaaaagaaaaagggtgaTTCCACACCCATCATCTCTTTAGTTTATGAGCCAGTCCACCAGAAATCAGACCTAAAGCACCAGTGAAATAGAAGGCCAAGCAATGATCAACTTCTCTCAGGGTTTCGTGTGTTCGTTTCTTTCAGAAGTGTTTCACTCCTTCCTTCCCTACAGGATGTTTCAAGTCACAGGCTTATAGGATGTCATTGCCTTGGTGTCGCTTTCCATAGTCTATTGCATGGTCCCCTTGAAGCTCTCGATCTTCATCTTGGACGTCTTCTTCCCCACCATCACCATCCTCTTCCTCATTGTAGGCCAGCTCGGCCTGCTTGTCCGCCTCATACTCACCCACGTTCCCATCATCCCCGTTGTAGTCCGCTAGCTTAGAGCCATGCTGCGGATCTACAGGGGACTCGTTCTCATCAAAGAAACGGCCTGCGGAGGCAGAGAAGTCCCCAtcaggaggagagagggagagagagagagagagagagaaagagggaggagcgaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacacgtTGGAGATAAGAATGAGACAGAGAATGAGTGAGTGACTGAATGGGGCAGGGAAAtgtgtgagcgagagagagagagagagaggacgagaGTGTATAGGTGAAGAAAGGTGAAGAACAGGTTTACGCCAGCAGGTGTCAGGCAGCAGCAGGGCTTGTGCTCTCCCCTGCACCCCTCCGCACTCACACCCCGTACACGGTCTATGGTCTGAAAGCCCTGTGATGTTGCGAGCGTCGGCCCTTTATCCAAACTGACCGCTACTTTCCCTGGTCAAACGCCGACACAGGGTTCAGTGCCAGTGGATGGACAAGGCACAGGAGTGCAGTCAGCCAGCCACTGGTCAAGTTACCCATCCAAAGTCAtctttatttactgattttgaaatgtgtcaatCCCCAGACAGAGCACCTGGACAACAGTAGCCGGAGCTGCGTTCATCAACTAACTTCAGAAGTGTGTGAAGAGAAAACTGACTGAGAAAAGGAGACactcttaataaataaatacatacatacatacatacatatatatatatatacaccagtgACCATGATCAGCATTAGTAGAGCATGCAATGTTGCTGTGActttcagagaaaactaaaacaaaaataaaaattgcaaaagaactaaaacaaaaagaaaatagtcCAAAGTGGAGGCCTGCAGGACAAAAGCACTGGCGTTGTGAAGCAGGGTGCAACAAGCAGTGCACTCCTGCCACAGTGGAGATGCAGCACAGGCACCCAGACCAACGCTGACCTCCTTCAAGGTCACCAGTGAAcccctctcacacacatgcGCGCAAGCATGTACGCgcactccttctctctctctctcactcacacacacacacacacacactccctctctcatgCACCCACACGCGCTCCCTCTCACAGGTTGTGCGAGACTGAGGGGCGAACACCAGAGAGACAGACCTGTGAGGTTTGCAGCAGCGGTGCACAAGTCCAGGCTTTCACTCTTGAAATAGTCTTCACTCATTAAAACCTTGCTTTCAACCCGAAAGCATTCATTACCCTCTCAGTCTCTTGAGCTTATGTGGGAGTTTTATACACTCAGTGCTAACTAAGGGGGGGTGGACTTACTCTGGCGGTGGCGGGGGGGTTCAGCGGGTGGGAGGTCGTGGCCCAGGCGATGCTCCATTGGGTTGGGCAGGACCTGTGCTGGGTTGGGCAGGAcctgtgctgggttggggggCAGCTGGAGGCCCACGTCGTTAGCAGCAAGGTGGTCAACCGGCCTCACATCTTCAGGGGCTGCATGACAGAGAGAAGCAGAAATGGTGTGAGGGGGgtggatataaaaaaaatatgttttactccCCTATGCTAGATTTAATGGTagtttattaaaggcattggtGGAATCAGTTTATCAGCAAGCAAAAAAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29906 lncRNA upstream 34418 19010714 ~ 19014831 (+) True AMCG00007452
TU29811 lncRNA upstream 329455 18714671 ~ 18719794 (+) True G23804
TU29795 lncRNA upstream 424190 18623921 ~ 18625059 (+) True G23791
TU29783 lncRNA upstream 460181 18588866 ~ 18589068 (+) True G23782
TU29782 lncRNA upstream 460559 18588016 ~ 18588690 (+) True G23781
TU30099 lncRNA downstream 516979 19629304 ~ 19630607 (+) True G24030
TU30112 lncRNA downstream 538331 19650656 ~ 19650874 (+) True G24040
TU30167 lncRNA downstream 687160 19799485 ~ 19799952 (+) True G24083
TU30169 lncRNA downstream 690528 19802853 ~ 19803466 (+) True G24085
TU30172 lncRNA downstream 703470 19815795 ~ 19818345 (+) True G24088
AMCG00007453 mRNA upstream 1490 19032084 ~ 19047759 (+) True AMCG00007453
AMCG00007452 mRNA upstream 34350 19007550 ~ 19014899 (+) False AMCG00007452
AMCG00007451 mRNA upstream 77045 18939265 ~ 18972204 (+) True AMCG00007451
AMCG00007450 mRNA upstream 152620 18875555 ~ 18896629 (+) True AMCG00007450
AMCG00007447 mRNA upstream 234321 18810855 ~ 18814928 (+) True AMCG00007447
AMCG00007458 mRNA downstream 30808 19143133 ~ 19167032 (+) True AMCG00007458
AMCG00007464 mRNA downstream 67470 19179795 ~ 19182234 (+) True AMCG00007464
AMCG00007466 mRNA downstream 78421 19190746 ~ 19194345 (+) True AMCG00007466
AMCG00007465 mRNA downstream 106465 19218790 ~ 19236741 (+) True AMCG00007465
AMCG00007467 mRNA downstream 190784 19303109 ~ 19338989 (+) True AMCG00007467
TU29768 other upstream 478785 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 756911 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 840941 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 847289 18198768 ~ 18201960 (+) True AMCG00007417
TU28988 other upstream 3761289 15286497 ~ 15287960 (+) False AMCG00007352
TU30494 other downstream 1948076 21060401 ~ 21066783 (+) False AMCG00007514
TU30868 other downstream 3169375 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 4077135 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 5079896 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 8971497 28083822 ~ 28094741 (+) True G25822

Expression Profile