RNA id: TU29920



Basic Information


Item Value
RNA id TU29920
length 575
RNA type TUCP
GC content 0.46
exon number 6
gene id G23893
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19050977 ~ 19056133 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAACCACCTAAAAACAGGAGCCAGGGACCCGAGCAGCGGCAGGAACTTACATGAAATACAGAGATCTCGGAACAAAGACTCCAGAAAACTGGAATAGTGCACGGACTTCTCGTACTGGGAGATCTTTTCCTTTAGCAGCTTTTCAAATTCTGTGAAGTCATCTTTAGAAGAAGGATTCATGGCATCAATTCCTGTTACATTATTTACACCGAAGGCTTCTTTTGCTAGTTCAAGGTCTGCTTCTTCTTGCAACTGTTTCACTCGCAGCTTCTCTGCCATCTGTTGTTCTACTGTCAGTTCTGCCTCGGATTCCTCTAACCTCTTTTTGATTTCCTCCTGCTTTTTCCTCTGTCGGGTCTCCTTCTCTTTGatcttttcaattaattttttcTTGTCTGAAACTTTAACGTctgtttttttctcctctgcCTTCTTCTCCTCATCTTCGTCATCATCCCAATTGTCCTTCACGTCTTCCTCCTCGTCCTCGCCTTCCCACTTGTCCAACACGGGCACTTTCTTGATCGGCTCATCCTGCTCCTCGAAGTTGTCGGCGTCCCAGGAGTCGACGTCCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU29916 lncRNA upstream 739 19048086 ~ 19050603 (+) False G23891
TU29915 lncRNA upstream 739 19049249 ~ 19050603 (+) False G23891
TU29906 lncRNA upstream 36511 19010714 ~ 19014831 (+) True AMCG00007452
TU29811 lncRNA upstream 331548 18714671 ~ 18719794 (+) True G23804
TU29795 lncRNA upstream 426283 18623921 ~ 18625059 (+) True G23791
TU29902 lncRNA downstream 23949 19080082 ~ 19083613 (+) True G23886
TU29917 lncRNA downstream 49955 19106088 ~ 19112325 (+) True G23891
TU30099 lncRNA downstream 573171 19629304 ~ 19630607 (+) True G24030
TU30112 lncRNA downstream 594523 19650656 ~ 19650874 (+) True G24040
TU30167 lncRNA downstream 743352 19799485 ~ 19799952 (+) True G24083
AMCG00007453 mRNA upstream 3583 19032084 ~ 19047759 (+) True AMCG00007453
AMCG00007452 mRNA upstream 36443 19007550 ~ 19014899 (+) False AMCG00007452
AMCG00007451 mRNA upstream 79138 18939265 ~ 18972204 (+) True AMCG00007451
AMCG00007450 mRNA upstream 154713 18875555 ~ 18896629 (+) True AMCG00007450
AMCG00007447 mRNA upstream 236414 18810855 ~ 18814928 (+) True AMCG00007447
AMCG00007458 mRNA downstream 87000 19143133 ~ 19167032 (+) True AMCG00007458
AMCG00007464 mRNA downstream 123662 19179795 ~ 19182234 (+) True AMCG00007464
AMCG00007466 mRNA downstream 134613 19190746 ~ 19194345 (+) True AMCG00007466
AMCG00007465 mRNA downstream 162657 19218790 ~ 19236741 (+) True AMCG00007465
AMCG00007467 mRNA downstream 246976 19303109 ~ 19338989 (+) True AMCG00007467
TU29768 other upstream 480878 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 759004 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 843034 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 849382 18198768 ~ 18201960 (+) True AMCG00007417
TU28988 other upstream 3763382 15286497 ~ 15287960 (+) False AMCG00007352
TU30494 other downstream 2004268 21060401 ~ 21066783 (+) False AMCG00007514
TU30868 other downstream 3225567 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 4133327 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 5136088 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 9027689 28083822 ~ 28094741 (+) True G25822

Expression Profile