RNA id: TU30099



Basic Information


Item Value
RNA id TU30099
length 656
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G24030
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19629304 ~ 19630607 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGGCCGCCCAGACTTCAGCGTAGAAACTCTGAACAGATCTTTGAATTTGCCACTTGGCCAGCGTCAGGATGTGGCAGGAGAGGGAGACGCTGAGTTCCTCTCCTCTTTGTGCCTTGCCTTTAAGAGCTAAAGCCATGATAGGTTCGGTTAAACATTAGTAGGCTTTacgaaaacatacatttattactACGACCAGTCGGGACGCTGCCATTGGCCTGAGCTGGGGttcacacgcacacagacacctCCTCCGCGGGGCAGATCAGTCTATTCTGCTCTTATGGAGACGGGACCAGGCGCAACAAGGACAACTTTTTTACAGGGGAGGTCTAAGAAACACGTAGAACCTGCAGCTTTGTAGAAGAACCGTTATAGATATTCGTTTTTTCCCACGTTTATTCCGCTGAAAAGGATTACAAGATGTTTTCCGTAAAACCTCTAAAACCCACTTTCAAATCCTACCTCCCTCCTTTGCAGACGGAGGTTAAGAGAAGTCCCCAGCCCACCATCAAGAAACTAGAGGCGAGATTGCTGCCAGGTGAGCTATACTGTCTTTGGATGAAGTGACAAATCTTGCAAGCAGTGTGGTACTGCAGTGTGGCAAAGGAAAATCGCACACTTTTAAAatttttaatgatatatttttatggaCACGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU29914 lncRNA upstream 516979 19049249 ~ 19112325 (+) False G23891
TU29917 lncRNA upstream 516979 19106088 ~ 19112325 (+) True G23891
TU29903 lncRNA upstream 541832 19004347 ~ 19087472 (+) True G23887
TU29902 lncRNA upstream 545691 19080082 ~ 19083613 (+) True G23886
TU29919 lncRNA upstream 577691 19050977 ~ 19051613 (+) False G23893
TU30112 lncRNA downstream 20049 19650656 ~ 19650874 (+) True G24040
TU30167 lncRNA downstream 168878 19799485 ~ 19799952 (+) True G24083
TU30169 lncRNA downstream 172246 19802853 ~ 19803466 (+) True G24085
TU30172 lncRNA downstream 185188 19815795 ~ 19818345 (+) True G24088
TU30211 lncRNA downstream 313272 19943879 ~ 19949591 (+) True AMCG00007483
AMCG00007473 mRNA upstream 26345 19592421 ~ 19602959 (+) True AMCG00007473
AMCG00007472 mRNA upstream 38404 19580414 ~ 19590900 (+) True AMCG00007472
AMCG00007468 mRNA upstream 150215 19463556 ~ 19479089 (+) True AMCG00007468
AMCG00007469 mRNA upstream 177835 19442457 ~ 19451469 (+) True AMCG00007469
AMCG00007467 mRNA upstream 290315 19303109 ~ 19338989 (+) True AMCG00007467
AMCG00007476 mRNA downstream 36194 19666801 ~ 19714103 (+) True AMCG00007476
AMCG00007478 mRNA downstream 149970 19780577 ~ 19792758 (+) True AMCG00007478
AMCG00007482 mRNA downstream 250461 19881068 ~ 19910112 (+) True AMCG00007482
AMCG00007483 mRNA downstream 308563 19939170 ~ 19951428 (+) False AMCG00007483
AMCG00007488 mRNA downstream 348333 19978940 ~ 19992609 (+) True AMCG00007488
TU29920 other upstream 573171 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 1058840 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 1336966 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 1420996 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 1427344 18198768 ~ 18201960 (+) True AMCG00007417
TU30494 other downstream 1429794 21060401 ~ 21066783 (+) False AMCG00007514
TU30868 other downstream 2651093 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 3558853 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 4561614 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 8453215 28083822 ~ 28094741 (+) True G25822

Expression Profile