RNA id: TU30321


Basic Information

Item Value
RNA id TU30321
length 257
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G24202
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 20256146 ~ 20256402 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAACAACTAATAATGTCAATCAATTCTGTGTTATGTgcatttacagattaaaaatactGTCCCTTTGTGCTCGAGTCTGTTGTGGTGGAGCTGTCAATCCTGGTGGATTTATTTAATCCATGTTGGTGAATTTGCCACACCAAACAAATTGCATTTTCTAGACCGCTGAATGCACTGAAGCTCTGTGGAACTccatcataatttaaaaatataatcttctGTATCTCCCAgggaaatgtatatatctaACGGTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30271 lncRNA upstream 151076 20104720 ~ 20105070 (+) True G24167
TU30260 lncRNA upstream 164519 20061973 ~ 20091627 (+) True G24156
TU30211 lncRNA upstream 306555 19943879 ~ 19949591 (+) True AMCG00007483
TU30172 lncRNA upstream 437801 19815795 ~ 19818345 (+) True G24088
TU30169 lncRNA upstream 452680 19802853 ~ 19803466 (+) True G24085
TU30324 lncRNA downstream 8991 20265393 ~ 20265614 (+) True G24205
TU30335 lncRNA downstream 80919 20337321 ~ 20339803 (+) True G24212
TU30347 lncRNA downstream 87683 20344085 ~ 20344387 (+) True G24220
TU30393 lncRNA downstream 230743 20487145 ~ 20487683 (+) True G24252
TU30394 lncRNA downstream 231403 20487805 ~ 20488377 (+) True G24253
AMCG00007497 mRNA upstream 4647 20237839 ~ 20251499 (+) True AMCG00007497
AMCG00007488 mRNA upstream 263537 19978940 ~ 19992609 (+) True AMCG00007488
AMCG00007483 mRNA upstream 304718 19939170 ~ 19951428 (+) False AMCG00007483
AMCG00007482 mRNA upstream 346034 19881068 ~ 19910112 (+) True AMCG00007482
AMCG00007478 mRNA upstream 463388 19780577 ~ 19792758 (+) True AMCG00007478
AMCG00007495 mRNA downstream 11758 20268160 ~ 20275806 (+) True AMCG00007495
AMCG00007496 mRNA downstream 69074 20325476 ~ 20335371 (+) True AMCG00007496
AMCG00007499 mRNA downstream 114812 20371214 ~ 20385040 (+) True AMCG00007499
AMCG00007498 mRNA downstream 158962 20415364 ~ 20428546 (+) True AMCG00007498
AMCG00007501 mRNA downstream 185101 20441503 ~ 20446920 (+) True AMCG00007501
TU29920 other upstream 1200013 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 1685682 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 1963808 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 2047838 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 2054186 18198768 ~ 18201960 (+) True AMCG00007417
TU30494 other downstream 803999 21060401 ~ 21066783 (+) False AMCG00007514
TU30868 other downstream 2025298 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 2933058 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 3935819 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 7827420 28083822 ~ 28094741 (+) True G25822

Expression Profile