RNA id: TU30335


Basic Information

Item Value
RNA id TU30335
length 2483
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G24212
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 20337321 ~ 20339803 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTCCCCTGTCACTGAACACCTTCACTTCTGTCTGGgtgttcttttaatttgtattttcttgtgcCTATGCACTTTTGATCTAACCTCGTGTTTACTGTACTACAGTAAAGATATTTTACTGGATTACCCAATCCCACTGCCCAGAATGATGGATTTTGGATATGACCTGGAGAATACCTGCTTGTCAACACCtaaattgttttttgtctgAGGTTTTTCTGCTGTGTTCTCTTGACTTCATGGGTGAAATGTTCAGAGATGCAAGAAACTTGATGAATGGGAACATTGAGATTCTTCTGTGGAAATGACTGAGCCTCACTGCATCTGTGGTGACTTGTATTGCTGTAAGAAATGGAAAGACTAACGATCAGGCCAGGATCAAcaagcaatgaaaataaattgcgCTTGGTTTTATATCAGATCTATCCATGTGGAAAATGCTGTGTTACCGTTCATCATTATTTGTAGAGGAGCAAAGATTCTTACTATTGAGCCCTCTGACTTCTTTGGATGTGTCCTTCTGATAATGTTTTGGCAGTGTTTGGTTTTATCTGAGAAAAAGCAGTAAATTTGACCCTTGATACTCCAAACCACGACCTTCTGAGATAACGGGTTTCAGCTCTTAGACATCTAGGTGCACCTTCTTTCCTGATTTTAAAGCAACAGCGTGATTAAGACAGATGAGGTGAAATGTTGTCTTCCTTGACCACCTAAGGGTATTTTTGCAATGTCTGACTGTTCCAATTGGTCATTTTATCAAAGTAAGCTGGACACTTTATTAGGAGTCGTTGTATTGCAATATAGGTTTTAGAGACTCAGCACTTCCAAGCCTTATCTCCATACCAAAGAAAAGCTGTCCAACTTGATATTGAAGAGAAGATGGGATTGCGGTTTAGAACTACTTGTCGAATTACCATTCCCAATCCACCACCGCAGAAGGGCCATTCATCTGTACACAGTTCAGTTGATGTTTGCTGAAAGGGTGAAGCTGAAGTTTATGGCATCTGAAAAATTGGAATTAAGTGTCACTTTTAAAGTGGGTTGCTTCTCTATAacactgggattttttttttttctttctttctgaaagGCATGTTTGATAACACTACTGCctgggtttaaaaaacaatgtagcAGGATATGAATAGGCTTAAATTGgtatatgtattgtaatgatTTCACTCCTGAGCAGTTCCAGAGCTGCAGGGAGAATGGAATACATCAAAACACTGTATAATGATCATAATGCTCAGTTGTGTTGTGCATCTTCAGAATATACTGATCATTTTGGATCTATAGCCAGTTCCGTATAGTGAGTATTTAGCTTTTGACCCATTTCTTGTACAGACGATTGCTTATGTTCAGATTCTAGCTTGGTGATTAatgtcagatttatttttattgttttttttgtttttaagatttacattttctgtcttggcagatgaaaaatgtaatttgaatgcGAACAATAGCAtggtttattaaagaaaaacaaaagtgttatgATGCATTTGCAGGTTGTGTAACTCTGTGACAGAGACATTTGTGCTCAGAACTTTGCAGCAGACACTGGAAATTCTATGGTTCAAAGTTCAGCAAGCTTTCTGAGGTTCACATTATTGCACTAAACTTTTTAAGAACCTAGGTTTTGGCACCTCTTTTAggacaaatgcaaaacaattgaagcccgcaaaaaaaaaaaaaaaatatttttataaggagcttaacaaaataaatttggggagggggggaagaagaaaaaaaaggtgaagtgtcataaaaaaaatgacaactttAATTGTCTTATGTAGCAATGTGCTTTGATCTCAATGAGATAATTATTTTACTCATTCTCATACATGAGAATataaaacaggatttaaaaaataaaaataaatcttcaccACGTTGATACCGGATCACGTGGGTGCATGTGTATTGGATTCTATTGTACAGTGCTAGGTATTCTTCGTAACCACTTTCTTTGCTGTAATGAATACTGGCATTGACCAGACAGGTTTAGTTGCTCACTTAACACGTTACTTACGTTCTTTGATGTTTACTAATTCAAATTAGTACTTGTTCAGTATGTTCAGTTtttgaattctgttttatttgatgtttttttttttcttatacttttaaaaaaaacaaaacaaaaaaaatattttgcatctctTCTTGTGAGGAAAATTCatgaatttttaatttttttattttattgctcaaaaccattttaataagCACTGATGTTTGGACTTTGATGAAGGAACTAGATTTTCTTCCGGGAATGCACAAGAGCTTCATTCAGTAGTGATTAATGTTCTCCCACACTGTAAGTTTTCACTGTCCCTCTAGAGCTGCTCCCCCTGCCATCATTTTCATTTAGAGTAGCAGATTAATCTCCCCCCCAGTGTTAATGTTGTCTGTTGTACAGCTGAACGTACAGTAGTTTGATAATGTTGCGATAGCATTTCAg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30324 lncRNA upstream 71707 20265393 ~ 20265614 (+) True G24205
TU30321 lncRNA upstream 80919 20256146 ~ 20256402 (+) True G24202
TU30271 lncRNA upstream 232251 20104720 ~ 20105070 (+) True G24167
TU30260 lncRNA upstream 245694 20061973 ~ 20091627 (+) True G24156
TU30211 lncRNA upstream 387730 19943879 ~ 19949591 (+) True AMCG00007483
TU30347 lncRNA downstream 4282 20344085 ~ 20344387 (+) True G24220
TU30393 lncRNA downstream 147342 20487145 ~ 20487683 (+) True G24252
TU30394 lncRNA downstream 148002 20487805 ~ 20488377 (+) True G24253
TU30395 lncRNA downstream 148728 20488531 ~ 20489202 (+) True G24254
TU30396 lncRNA downstream 149494 20489297 ~ 20489756 (+) True G24255
AMCG00007496 mRNA upstream 1950 20325476 ~ 20335371 (+) True AMCG00007496
AMCG00007495 mRNA upstream 61515 20268160 ~ 20275806 (+) True AMCG00007495
AMCG00007497 mRNA upstream 85822 20237839 ~ 20251499 (+) True AMCG00007497
AMCG00007488 mRNA upstream 344712 19978940 ~ 19992609 (+) True AMCG00007488
AMCG00007483 mRNA upstream 385893 19939170 ~ 19951428 (+) False AMCG00007483
AMCG00007499 mRNA downstream 31411 20371214 ~ 20385040 (+) True AMCG00007499
AMCG00007498 mRNA downstream 75561 20415364 ~ 20428546 (+) True AMCG00007498
AMCG00007501 mRNA downstream 101700 20441503 ~ 20446920 (+) True AMCG00007501
AMCG00007509 mRNA downstream 121456 20461259 ~ 20462953 (+) True AMCG00007509
AMCG00007506 mRNA downstream 126923 20466726 ~ 20470825 (+) True AMCG00007506
TU29920 other upstream 1281188 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 1766857 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 2044983 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 2129013 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 2135361 18198768 ~ 18201960 (+) True AMCG00007417
TU30494 other downstream 720598 21060401 ~ 21066783 (+) False AMCG00007514
TU30868 other downstream 1941897 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 2849657 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 3852418 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 7744019 28083822 ~ 28094741 (+) True G25822

Expression Profile