RNA id: TU30336


Basic Information

Item Value
RNA id TU30336
length 320
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G24213
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 20288523 ~ 20288842 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGTGTTGCAAAGCGCTGGCCTCGGACCCCTGCAACCCCGATACAAGGGAGGGCAAAGACCCCATACCAGAGTTGGGCTTCTGGTGTGGACCAGGCTGTTGTTGATCCTCAGCCATCATGATCTTCAGGaggggatgaggaggaggaggaggaggggggggggggtatctAGCAACTAGGCCTCAACCTGGACCTCGAGTAAGAAGCTCTTTCCTTGCTATGGCACATCACGGACCTACCCGTAGCTAGCGTATGAATTAGCCTCGAATCCACCTGCTACGACGTTTGCAAACCATGGCTATACGGGATGATATGAAAc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30293 lncRNA downstream 66519 20211019 ~ 20222004 (-) False AMCG00007494
TU30294 lncRNA downstream 66519 20211019 ~ 20222004 (-) True AMCG00007494
TU30296 lncRNA downstream 66519 20211019 ~ 20222004 (-) False AMCG00007494
TU30194 lncRNA downstream 375607 19867858 ~ 19912916 (-) True G24102
TU30182 lncRNA downstream 490947 19791701 ~ 19797576 (-) True AMCG00007481
TU30339 lncRNA upstream 41858 20330700 ~ 20330902 (-) True G24216
TU30341 lncRNA upstream 46229 20335071 ~ 20337168 (-) True G24218
TU30343 lncRNA upstream 48459 20337301 ~ 20339837 (-) False G24219
TU30344 lncRNA upstream 48459 20337301 ~ 20339909 (-) True G24219
TU30348 lncRNA upstream 55197 20344039 ~ 20344379 (-) True G24221
AMCG00007493 mRNA downstream 3322 20268671 ~ 20285201 (-) True AMCG00007493
AMCG00007494 mRNA downstream 66589 20171329 ~ 20221934 (-) False AMCG00007494
AMCG00007489 mRNA downstream 145790 20112050 ~ 20142733 (-) True AMCG00007489
AMCG00007490 mRNA downstream 187802 20061932 ~ 20100721 (-) True AMCG00007490
AMCG00007491 mRNA downstream 234869 20034695 ~ 20053654 (-) True AMCG00007491
AMCG00007500 mRNA upstream 173662 20462504 ~ 20472919 (-) False AMCG00007500
AMCG00007502 mRNA upstream 198589 20487431 ~ 20492501 (-) True AMCG00007502
AMCG00007507 mRNA upstream 298730 20587572 ~ 20589199 (-) True AMCG00007507
AMCG00007508 mRNA upstream 317341 20606183 ~ 20618162 (-) True AMCG00007508
AMCG00007511 mRNA upstream 359415 20648257 ~ 20676334 (-) True AMCG00007511
TU30203 other downstream 365370 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 1510885 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 2229574 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 3666618 16530174 ~ 16621905 (-) False AMCG00007375
TU29238 other downstream 3965872 16321037 ~ 16322651 (-) False AMCG00007365
TU30340 other upstream 42671 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 182269 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 3682829 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 3976982 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 4975490 25264332 ~ 25264951 (-) True G25422

Expression Profile