RNA id: TU30341


Basic Information

Item Value
RNA id TU30341
length 2098
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G24218
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 20335071 ~ 20337168 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCTTCCCTTCCACCACTTATCTCAACCACTACACTACCATTGAAAAGCATTATGTCATTAGAGCCATTTTCAGGTCTTAGATGGAGTTAATCAAATTCAGTGaaaatttgtaataaaataaatgcagtctgAGACAGTCAATTCTCATATTCTGCCAGCATTATCATACTGACTTTTTATACAAACACACGTACGcagatatacacatacatacaaaataagatGGATTATGAAAAGGACACTGGGATACTGCACTGAACAAGAATGTGCGTAATAACGTAAGACTGAATGGATCaactttttcatttataaaatcaGACGTGCTTTATGTCCCAGCCCAGCTGCCACGGGCTTACTGCTCAGCACGGGTGTGCAACGTACCAACAGGGTGCCATGAAGACCGAAGACTGTATTACATCCTatgaaaaagcaaaactgaaCAGGTTTTTCAGTTCAACAAAATTCATGGACATTGTTTAATGATCAGATTAAGCTGCTCCATTATTTTGTCCTGATTATAAAAGTATTACTTCCTATAGCTCTGTAAAAGCTGCCTTCATAGGTCTTTATTGTACAAATGTCATATTATATTACCCTTTAAAAGTCTTAAGGCATACTGCAAATACCTTACAATGACTTGCTGTAGATAGAAACAGCCTACAAAGTATTCCCTCGTGCACATCTCAatttgtgtgaaaaaacaaaaagaaaatagcaaTTTCCCTGTAACTTATGTGGGTATTACTTCCCTTCTCAGAAATAGACAGTACTTGTAAGTACAGGTTTTAATCAAATTTCTCAGGAATTCCAATGACTAAAGATATACGAAAAGCTCTACCTTGATTTGGTATTATCTTTTTTCAGCACCTGATAGCAGTTTCGCTGCCCTTGTTAACCTGAAATATTAAGGAGATAAAAGCCTTGAAGCACACGCTGCGAATAAAAGCTGCTAAaacttttcctctctcttccaTTCCCATAAAGCCATTAATTAAACCTTTCTGGGTTCTCAGTAAAAATATACAGACattatgaggaaaataaaaatggagtGAAATTCATGATGGAATGTGCACACATCTTGAttccacccccgcccccccaaaaaaacaccaATAGGAATTCAGAGCCACCTTATGATCCCATAATGGTATGTTGGATGACGAGTATTGTCTAGATTTAAGTGCAGCAAGTACAGCAATCTGCTGGACGCAAGAGCcttttgttgattttgtacattttgttaaatatgacAAGTCTGTTAAAAGATGACACAAACATTTGCAACAAGAAACCCTAAGAAGAACAGTGTAAAGCAGCTGATTAATTTCCTCATTGGAATCTGTCCTTATACAAGAAATTACCTTCAGTAATTCAGGGTTTTTTCTAAGAGGAAACGCATAGTAACACAAGCTGTCAAGCCTTCCTATACACACCTGTACTACGCAAAGTGCAGACATGCTTATGCTAATGCATATATGCCTTTCAATTGTTGATTCTATGATATACCATGATATACCATGTATTTCTCTTGTCAGGGAGAGGCAGGGGGCACAGGGGTACACAGCACTGGCGACTCGCTCTGATGcagcaaacattttgaaaaacactaTTAAGAGTGATTGTGTTCTGGTTTTAGGCTGGCACGTCTCACTGGACAAATGTGATGTGTCCAGATTCTGATGCAGTGTGCTATACaagtacttttttttgtgtgaataattacaaaaaacagagataaaacaaaaaacaaacatacatacaaacaaaccaaccaacaaacaaaataaaatacattaacccAACATTTCCACTGTAGGCTGGTCTTTGCTCTCCAGCCAGTCAAAACCTGTAGAGTTCACAGTCTCATTGCAAATCTGCTGGAAAAGTGGATCGTTCTTCAGATCTTCCAGTGTAGAATCTTCATATTGCCCCTGCTGCCGATTGGGGTCAAACAGTAGATTTGTGTCTAAAGTGTTCAGGTCATTGATGCTGCTTGACAGCTCAGAGGCTAATCTGATGTCACTAGAAAAATCAGATGCCACTGCATTGAGTTCAGATGCTACCTGGCCCACGAGCTGCGAGCTGGGGTTAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30339 lncRNA downstream 4169 20330700 ~ 20330902 (-) True G24216
TU30336 lncRNA downstream 46229 20288523 ~ 20288842 (-) True G24213
TU30293 lncRNA downstream 113067 20211019 ~ 20222004 (-) False AMCG00007494
TU30294 lncRNA downstream 113067 20211019 ~ 20222004 (-) True AMCG00007494
TU30296 lncRNA downstream 113067 20211019 ~ 20222004 (-) False AMCG00007494
TU30343 lncRNA upstream 133 20337301 ~ 20339837 (-) False G24219
TU30344 lncRNA upstream 133 20337301 ~ 20339909 (-) True G24219
TU30348 lncRNA upstream 6871 20344039 ~ 20344379 (-) True G24221
TU30375 lncRNA upstream 128085 20465253 ~ 20466435 (-) True G24243
TU30419 lncRNA upstream 176618 20513786 ~ 20517409 (-) True G24271
AMCG00007493 mRNA downstream 49870 20268671 ~ 20285201 (-) True AMCG00007493
AMCG00007494 mRNA downstream 113137 20171329 ~ 20221934 (-) False AMCG00007494
AMCG00007489 mRNA downstream 192338 20112050 ~ 20142733 (-) True AMCG00007489
AMCG00007490 mRNA downstream 234350 20061932 ~ 20100721 (-) True AMCG00007490
AMCG00007491 mRNA downstream 281417 20034695 ~ 20053654 (-) True AMCG00007491
AMCG00007500 mRNA upstream 125336 20462504 ~ 20472919 (-) False AMCG00007500
AMCG00007502 mRNA upstream 150263 20487431 ~ 20492501 (-) True AMCG00007502
AMCG00007507 mRNA upstream 250404 20587572 ~ 20589199 (-) True AMCG00007507
AMCG00007508 mRNA upstream 269015 20606183 ~ 20618162 (-) True AMCG00007508
AMCG00007511 mRNA upstream 311089 20648257 ~ 20676334 (-) True AMCG00007511
TU30340 other downstream 3260 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 411918 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 1557433 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 2276122 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 3713166 16530174 ~ 16621905 (-) False AMCG00007375
TU30382 other upstream 133943 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 3634503 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 3928656 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 4927164 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 5293627 25630795 ~ 25631592 (-) True AMCG00007684

Expression Profile