RNA id: TU30344


Basic Information

Item Value
RNA id TU30344
length 2609
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G24219
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 20337301 ~ 20339909 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttaaaaaaaaaagttttattggTTTTTAAAACCACTTAGAAAACCTCAACATGTGAgcactttcaattaaaaaaaaaaaaaaaaaaaagaaataataaaaactttgcTGAAATGCTATCGCAACATTATCAAACTACTGTACGTTCAGCTGTACAACAGACAACATTAACACTGGGGGGGAGATTAATCTGCTACTCTAAATGAAAATGATGGCAGGGGGAGCAGCTCTAGAGGGACAGTGAAAACTTACAGTGTGGGAGAACATTAATCACTACTGAATGAAGCTCTTGTGCATTCCCGGAAGAAAATCTAGTTCCTTCATCAAAGTCCAAACATCAGTGcttattaaaatggttttgagcaataaaataaaaaaattaaaaattcatGAATTTTCCTCACAAGAagagatgcaaaatattttttttgttttgttttttttaaaagtataagaaaaaaaaaaacatcaaataaaacagaattcaaaAACTGAACATACTGAACAAGTACTAATTTGAATTAGTAAACATCAAAGAACGTAAGTAACGTGTTAAGTGAGCAACTAAACCTGTCTGGTCAATGCCAGTATTCATTACAGCAAAGAAAGTGGTTACGAAGAATACCTAGCACTGTACAATAGAATCCAATACACATGCACCCACGTGATCCGGTATCAACGTggtgaagatttatttttattttttaaatcctgttttatATTCTCATGTATGAGAATGAGTAAAATAATTATCTCATTGAGATCAAAGCACATTGCTACATAAGACAATTaaagttgtcattttttttatgacacttcaccttttttttcttcttccccccctccccaaatttattttgttaagctccttataaaaatattttttttttttttttgcgggcttcaattgttttgcatttgtccTAAAAGAGGTGCCAAAACCTAGGTTCTTAAAAAGTTTAGTGCAATAATGTGAACCTCAGAAAGCTTGCTGAACTTTGAACCATAGAATTTCCAGTGTCTGCTGCAAAGTTCTGAGCACAAATGTCTCTGTCACAGAGTTACACAACCTGCAAATGCATcataacacttttgtttttctttaataaaccaTGCTATTGTTCgcattcaaattacatttttcatctgccaagacagaaaatgtaaatcttaaaaacaaaaaaaacaataaaaataaatctgacatTAATCACCAAGCTAGAATCTGAACATAAGCAATCGTCTGTACAAGAAATGGGTCAAAAGCTAAATACTCACTATACGGAACTGGCTATAGATCCAAAATGATCAGTATATTCTGAAGATGCACAACACAACTGAGCATTATGATCATTATACAGTGTTTTGATGTATTCCATTCTCCCTGCAGCTCTGGAACTGCTCAGGAGTGAAatcattacaatacatatacCAATTTAAGCCTATTCATATCCTgctacattgttttttaaacccagGCAGTAGTGTTATCAAACATGCctttcagaaagaaagaaaaaaaaaaaatcccagtgtTATAGAGAAGCAACCCACTTTAAAAGTGACACTTAATTCCAATTTTTCAGATGCCATAAACTTCAGCTTCACCCTTTCAGCAAACATCAACTGAACTGTGTACAGATGAATGGCCCTTCTGCGGTGGTGGATTGGGAATGGTAATTCGACAAGTAGTTCTAAACCGCAATCCCATCTTCTCTTCAATATCAAGTTGGACAGCTTTTCTTTGGTATGGAGATAAGGCTTGGAAGTGCTGAGTCTCTAAAACCTATATTGCAATACAACGACTCCTAATAAAGTGTCCAGCTTACTTTGATAAAATGACCAATTGGAACAGTCAGACATTGCAAAAATACCCTTAGGTGGTCAAGGAAGACAACATTTCACCTCATCTGTCTTAATCACGCTGTTGCTTTAAAATCAGGAAAGAAGGTGCACCTAGATGTCTAAGAGCTGAAACCCGTTATCTCAGAAGGTCGTGGTTTGGAGTATCAAGGGTCAAATTTACTGCTTTTTCTCAGATAAAACCAAACACTGCCAAAACATTATCAGAAGGACACATCCAAAGAAGTCAGAGGGCTCAATAGTAAGAATCTTTGCTCCTCTACAAATAATGATGAACGGTAACACAGCATTTTCCACATGGATAGATCTGATATAAAACCAAGcgcaatttattttcattgcttgTTGATCCTGGCCTGATCGTTAGTCTTTCCATTTCTTACAGCAATACAAGTCACCACAGATGCAGTGAGGCTCAGTCATTTCCACAGAAGAATCTCAATGTTCCCATTCATCAAGTTTCTTGCATCTCTGAACATTTCACCCATGAAGTCAAGAGAACACAGCAGAAAAACCTcagacaaaaaacaatttaGGTGTTGACAAGCAGGTATTCTCCAGGTCATATCCAAAATCCATCATTCTGGGCAGTGGGATTGGGTAATCCAGTAAAATATCTTTACTGTAGTACAGTAAACACGAGGTTAGATCAAAAGTGCATAGgcacaagaaaatacaaattaaaagaacacCCAGACAGAAGTGAAGGTGTTCAGTGACAGGGGAGCActagcattttgtttatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30341 lncRNA downstream 133 20335071 ~ 20337168 (-) True G24218
TU30339 lncRNA downstream 6399 20330700 ~ 20330902 (-) True G24216
TU30336 lncRNA downstream 48459 20288523 ~ 20288842 (-) True G24213
TU30294 lncRNA downstream 115297 20211019 ~ 20222004 (-) True AMCG00007494
TU30348 lncRNA upstream 4130 20344039 ~ 20344379 (-) True G24221
TU30375 lncRNA upstream 125344 20465253 ~ 20466435 (-) True G24243
TU30419 lncRNA upstream 173877 20513786 ~ 20517409 (-) True G24271
TU30420 lncRNA upstream 173877 20513786 ~ 20517473 (-) False G24271
TU30495 lncRNA upstream 720351 21060260 ~ 21066733 (-) False G24335
AMCG00007493 mRNA downstream 52100 20268671 ~ 20285201 (-) True AMCG00007493
AMCG00007494 mRNA downstream 115367 20171329 ~ 20221934 (-) False AMCG00007494
AMCG00007489 mRNA downstream 194568 20112050 ~ 20142733 (-) True AMCG00007489
AMCG00007490 mRNA downstream 236580 20061932 ~ 20100721 (-) True AMCG00007490
AMCG00007491 mRNA downstream 283647 20034695 ~ 20053654 (-) True AMCG00007491
AMCG00007500 mRNA upstream 122595 20462504 ~ 20472919 (-) False AMCG00007500
AMCG00007502 mRNA upstream 147522 20487431 ~ 20492501 (-) True AMCG00007502
AMCG00007507 mRNA upstream 247663 20587572 ~ 20589199 (-) True AMCG00007507
AMCG00007508 mRNA upstream 266274 20606183 ~ 20618162 (-) True AMCG00007508
AMCG00007511 mRNA upstream 308348 20648257 ~ 20676334 (-) True AMCG00007511
TU30340 other downstream 5490 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 414148 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 1559663 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 2278352 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 3715396 16530174 ~ 16621905 (-) False AMCG00007375
TU30382 other upstream 131202 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 3631762 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 3925915 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 4924423 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 5290886 25630795 ~ 25631592 (-) True AMCG00007684

Expression Profile