RNA id: TU30348


Basic Information

Item Value
RNA id TU30348
length 341
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G24221
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 20344039 ~ 20344379 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttgtaggcatatagtcaggcgtatgattaaacaattataccaaacaggtgctaatgatcatcaattcaatatgtaggttgaaacacaatcattaactgaaacagaaacagctgtgtaggaggaataaaactgggtgaggaacagccaaactcagctaacaaggtgaggttgctgaagacagtttactgtcaaaagtcatacaccatggcaagactgagcacagcaacaagacacaaggtagttatactgcatcagcaaggtctctcccaggcagaaatttcaaggcagacaggggtttccagatgtgctgtccaagctcttttgaagaagcacaaagaaac

Function

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30344 lncRNA downstream 4130 20337301 ~ 20339909 (-) True G24219
TU30343 lncRNA downstream 4202 20337301 ~ 20339837 (-) False G24219
TU30341 lncRNA downstream 6871 20335071 ~ 20337168 (-) True G24218
TU30339 lncRNA downstream 13137 20330700 ~ 20330902 (-) True G24216
TU30336 lncRNA downstream 55197 20288523 ~ 20288842 (-) True G24213
TU30375 lncRNA upstream 120874 20465253 ~ 20466435 (-) True G24243
TU30419 lncRNA upstream 169407 20513786 ~ 20517409 (-) True G24271
TU30420 lncRNA upstream 169407 20513786 ~ 20517473 (-) False G24271
TU30495 lncRNA upstream 715881 21060260 ~ 21066733 (-) False G24335
TU30496 lncRNA upstream 719306 21063685 ~ 21066733 (-) True G24335
AMCG00007493 mRNA downstream 58838 20268671 ~ 20285201 (-) True AMCG00007493
AMCG00007494 mRNA downstream 122105 20171329 ~ 20221934 (-) False AMCG00007494
AMCG00007489 mRNA downstream 201306 20112050 ~ 20142733 (-) True AMCG00007489
AMCG00007490 mRNA downstream 243318 20061932 ~ 20100721 (-) True AMCG00007490
AMCG00007491 mRNA downstream 290385 20034695 ~ 20053654 (-) True AMCG00007491
AMCG00007500 mRNA upstream 118125 20462504 ~ 20472919 (-) False AMCG00007500
AMCG00007502 mRNA upstream 143052 20487431 ~ 20492501 (-) True AMCG00007502
AMCG00007507 mRNA upstream 243193 20587572 ~ 20589199 (-) True AMCG00007507
AMCG00007508 mRNA upstream 261804 20606183 ~ 20618162 (-) True AMCG00007508
AMCG00007511 mRNA upstream 303878 20648257 ~ 20676334 (-) True AMCG00007511
TU30340 other downstream 12228 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 420886 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 1566401 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 2285090 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 3722134 16530174 ~ 16621905 (-) False AMCG00007375
TU30382 other upstream 126732 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 3627292 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 3921445 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 4919953 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 5286416 25630795 ~ 25631592 (-) True AMCG00007684

Expression Profile