RNA id: TU30419


Basic Information

Item Value
RNA id TU30419
length 1152
lncRNA type inter_gene
GC content 0.40
exon number 5
gene id G24271
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 20513786 ~ 20517473 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAATAAAACAGGCAACTTCGTTAACCATATTTAATATGCATGTTGCTTGATCCATCAAAACGCTTCACATTCACACATCagtaatttcaaatgtatagcAACTCTTTGATGTTGTTGTTCCAACATTAGCTTGACaatgaatatatgtgtgtttttaattggagCAGTTTGATTTCCCTCCCCTCATTGGGGGGTTGGAGGGGTGCATTACATCACATGTTTCAGCATTAAAGAAAAGATTGTGACTTTCTCTGTTGCCTGTAACTGTGAGCTTGTAGGAGTTGTAGAAGGGGAAAACTTTCTAAATAAAAGCTAAAATGTCTTAAAGAGCTTAAAGATCTGCTTGAATGTGTCTTCCCTCCAAAAGCCATAGTATTTCATTGTAGAACAGAAGCAGTCAGACATCTTTTAAGAGTCAGACATTTCCACATCTTGCAATTGGGCGTTCTTAATCTTGATCTTATCCTccagcttttcttttcGGCATGTGGAGCTCTGATTAGGTGGATGTTCTTCTTCACCTCTGTGATGGcttcctccttctccagctccttGCCCTTCTTCAGTCTGTTCATGATGAATCTTGCCTGTCTCTTGCGTTTGATTTCTTCTACTTTCTTCATGGCTTCCACTGTCTTGCTCCACAGTTCCCTCTGGTATTTGACTGGAAGATTTCTGCGCTTCTCAAACTCTAGAGCGTTAtcctgcattaaaaaataaatacaactgttaTTTACATGATAACTCATTTATTTGCTCCCAATACCATGAGATTAAGTGAGAGACACTCACCACTGTTAACTCCTTCCCGGATGCTTTTCGGAAAGCCTTGGTCCACCTTATCTTTCTGGGATTACGCTTCTTCTTGAAgtttttgtgacattttgatTTGCAGAATCTAAACATCTGCAGTCATTTCGGACAAACATCATTCCGTGGCCTGGATAAATAGGCCCGGagcaaaaataacatttctcaaTACGCATATTTACTGGATTTCAGcgtttttaaaaagcacctgAATCCCCACACTCCACACACAAGCATGGAGTGGTTATGAAAGGAAGTAGTAACGTTGAACTTCCGGGTTTAAgggttaaatcaaaatatacatgCTGCCACCATAGACAAAGAATAGAACTGGACGATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30375 lncRNA downstream 47351 20465253 ~ 20466435 (-) True G24243
TU30348 lncRNA downstream 169407 20344039 ~ 20344379 (-) True G24221
TU30344 lncRNA downstream 173877 20337301 ~ 20339909 (-) True G24219
TU30343 lncRNA downstream 173949 20337301 ~ 20339837 (-) False G24219
TU30341 lncRNA downstream 176618 20335071 ~ 20337168 (-) True G24218
TU30495 lncRNA upstream 542851 21060260 ~ 21066733 (-) False G24335
TU30496 lncRNA upstream 546276 21063685 ~ 21066733 (-) True G24335
TU30598 lncRNA upstream 632865 21150274 ~ 21177594 (-) True G24410
TU30594 lncRNA upstream 663512 21180921 ~ 21186161 (-) True G24409
TU30596 lncRNA upstream 663512 21180921 ~ 21182093 (-) False G24409
AMCG00007502 mRNA downstream 21285 20487431 ~ 20492501 (-) True AMCG00007502
AMCG00007500 mRNA downstream 40867 20462504 ~ 20472919 (-) False AMCG00007500
AMCG00007493 mRNA downstream 228585 20268671 ~ 20285201 (-) True AMCG00007493
AMCG00007494 mRNA downstream 291852 20171329 ~ 20221934 (-) False AMCG00007494
AMCG00007489 mRNA downstream 371053 20112050 ~ 20142733 (-) True AMCG00007489
AMCG00007507 mRNA upstream 70163 20587572 ~ 20589199 (-) True AMCG00007507
AMCG00007508 mRNA upstream 88774 20606183 ~ 20618162 (-) True AMCG00007508
AMCG00007511 mRNA upstream 130848 20648257 ~ 20676334 (-) True AMCG00007511
AMCG00007510 mRNA upstream 196142 20713551 ~ 20717142 (-) True AMCG00007510
AMCG00007520 mRNA upstream 697207 21214616 ~ 21224494 (-) True AMCG00007520
TU30382 other downstream 41082 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 181975 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 590633 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 1736148 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 2454837 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 3454262 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 3748415 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 4746923 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 5113386 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 14352026 34869435 ~ 34869807 (-) True G26961

Expression Profile