RNA id: TU30496


Basic Information

Item Value
RNA id TU30496
length 2366
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G24335
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 21060260 ~ 21066733 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTgtgcaaaactattttatttacaaaaaatggCACAAATGTGACTGCACAGTCTATGCACATGCACACTTCAAACATTTCCTTAGTGAGTTACCAGCTAGAAAACCTAAATGAGAAtggttttaaatagttttcagcACACATTCAGGACTAGGTTCACAAGGATTTTTCCAGGGTGGACAAATATTGCCCAAGAAAAACTGCAATTGATAAAGCTGAATGAGGTTTAAGGCCATTTTTGAAATTCAAGATTTTAGGCAAGCAAACACCAACCTGTTAGAACCTAGTTTCACACATGCTCTTTTTTTgattttcagattattattttttctccataaCATTACTCTGCTGCAATATCTGTATGgtccattctttatttcttaatatataaaacaaagaacatagCAGTAATAAGGGTgtgatggggggagggggaaagaCGTACATAATTGaagattatattaaataattcaagCACATTACTTCATAATTTAGATGAAGATAAGGAATGAtacagtaaaaatgtaaaactttctAAAATGTTGACTCCTGCCATCACTCCAAACACTAGGAAATATGTACACTTTCAATCAAAaactacagtacatttaaaccaTCAAGTATAACTTTGCAAGCTTTAGGATTCTTCCTCAGCATCTATTCCAGGTACTACACTTTGTGAACTTCTCCTTAAGCAGCACTAGTTACTGGAATCTGCCTACCAGTCAAGTGTTCTTAGAGCGCTTATCAATGGaagtataaaaagaaaaaaaaatacaaagaaaataagaaaactaataGATGAAGGGGGACAATAACAGGGATGAGAAAAGAGGAATGAGAACAAAAGCAGTGCAGTCGTAAAGCTCCCATCAACCTGCCAGCTTGCTAGCAACGAGAGAGGGTTTTCTCTGAGGCAGGTCTTGCGGTGTGGGGATGTGGTCTCCAGTTATCTCCGCCTTCTCTGCAGTGGCAGTAGGTAGTTGCTTGTTCTTCATCTTGGCCTTCGCCATGTTGTAGTCCCcagaatcaaaatatttttCCCTTTCTGAAGTCTTTTCCTGAGGAAGTCTGAGCCCCCAGGCTTGGCACCGAGGTGAGGATACCGAGCTTTCAGCTTCGCCTCTTCCACCTTCTCAGGGCTGATCACCTTATCCTCCATTTCCTATAGAAATAAGGAGCACACAGTTTCTGACTGCATCATACCTTACCCAAATCTTTCTTAAAGAGGTCATCAAATCAACGACTACACTGCCAAATGCTTCCCAATCAGGTCAATAACTTTGAAAGAACATGCCGACAGGCTAAACTTAGGACAGCACAATGTTAGCTACTACAGCCTCCTCAAAATAGTTCAAACATTATCTGAACCCATCTATCCTTAGttagaacaaaaatataaaatcactgGTTTATGTTCAATATGTATTTAGTGGAGATTCAGGAAAGCATTCCTCTTATTATCAGAGTTTCTGCATCCATGTGTCAAACAAAACGGACCTCACATCTTCACATGACTATTGCTGTGAGTAAAGTGACCACAGAAAAATCCACAGCACTACCAACAGACAGGAGGGCTGTTCTTCAACACAACTCTGTAATAACAAACAATGAAGCCTCCACAAGTCAACCCATGCCTTCCAATCATCGATTGAAGAAAGATTTTTGGGCGTTTGAAGCAGACAAACCATGTCAGACATGAACATAGCAACGATCAAACAAGGAGAAAACTACATTTGAGTCTTATTTGTGAAAGATTCAACCTTTTAATCATTAAGGTGAAGTCCtttatacaaaaagaaagaataaaaatcaATTGACATGCATCACTTTGATCTTTCCTTTGATCAGAACCCTGAAGCATCAAAGCGttcaaattatgtttaaatCCAACATTATCCTGTTCTTCCATACCCTACAGACAATGGATTCCCCCTCATATAACAAACCTACTTCAGATCACTTACAATTTGCTGGATGAagacatttttacataaaattcCACTCTGAGAATTTAACGTATCCAgtaaatgctgaaaaaaaaaaaagattactgACATTACAATGCTTACCTTAGATCTTtttaaccaaaatgtttttggaCCAAGcagcaaaagtaaaaaaacgTTTGGATTGAACGGTGCACTGCTCAGAAGTGACTGAATGCAGCAGAGGCATGCACAGAGGATGAGGAATATGGCTTGAGCAGCGAAAACAAACAACTGATACATTTGTGCTTCAAAAGGGGGATGGGGACAAGGGCTGGGACAAAGAATAAGGCTCTGTGAATACGCCAGCACAATAATCAAAGAGGATTTATTTGAAGACAAATCAATAACTCCCACCATCACGAAGAACCAGCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30420 lncRNA downstream 546212 20513786 ~ 20517473 (-) False G24271
TU30419 lncRNA downstream 546276 20513786 ~ 20517409 (-) True G24271
TU30375 lncRNA downstream 597250 20465253 ~ 20466435 (-) True G24243
TU30348 lncRNA downstream 719306 20344039 ~ 20344379 (-) True G24221
TU30344 lncRNA downstream 723776 20337301 ~ 20339909 (-) True G24219
TU30598 lncRNA upstream 83541 21150274 ~ 21177594 (-) True G24410
TU30594 lncRNA upstream 114188 21180921 ~ 21186161 (-) True G24409
TU30596 lncRNA upstream 114188 21180921 ~ 21182093 (-) False G24409
TU30623 lncRNA upstream 229645 21296378 ~ 21375032 (-) True G24430
TU30680 lncRNA upstream 644789 21711522 ~ 21718039 (-) True G24464
AMCG00007510 mRNA downstream 346543 20713551 ~ 20717142 (-) True AMCG00007510
AMCG00007511 mRNA downstream 387351 20648257 ~ 20676334 (-) True AMCG00007511
AMCG00007508 mRNA downstream 445523 20606183 ~ 20618162 (-) True AMCG00007508
AMCG00007507 mRNA downstream 474486 20587572 ~ 20589199 (-) True AMCG00007507
AMCG00007502 mRNA downstream 571184 20487431 ~ 20492501 (-) True AMCG00007502
AMCG00007520 mRNA upstream 147883 21214616 ~ 21224494 (-) True AMCG00007520
AMCG00007521 mRNA upstream 190845 21257578 ~ 21264539 (-) True AMCG00007521
AMCG00007526 mRNA upstream 255499 21322232 ~ 21335390 (-) True AMCG00007526
AMCG00007527 mRNA upstream 287787 21354520 ~ 21357001 (-) True AMCG00007527
AMCG00007529 mRNA upstream 330953 21397686 ~ 21402540 (-) True AMCG00007529
TU30382 other downstream 590981 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 731874 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 1140532 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 2286047 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 3004736 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 2904938 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 3199091 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 4197599 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 4564062 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 13802702 34869435 ~ 34869807 (-) True G26961

Expression Profile