RNA id: TU30594


Basic Information

Item Value
RNA id TU30594
length 1730
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G24409
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 21180921 ~ 21186161 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aatattcttaaaaaaaaatttatttagaagaaaatacatgATATGTattctttcataaataaatagacttgTACAATAGAAGGGGATATTAAAATGACCAATGATTAAAACATTGACCAGGCAGTATCCATTATtgaacttatttaaaaaaaaaaaaaaaaaaaaaaaaaaaNNNNNNNNNNAAGGGTCACTGTTGGgttttaagtgattttcatTGATCTCAATGTGCAGAAAAATGTGTATACTATTTTATATTCCCAGACAAATATTCTTGTAAATAACCAGTATAAGTCAACATAATCAGTGCTGCCGGACAGGAAATCTAAAGCAGGATTTCACCAAATTAAGCACCATTTACAAAATATCCACATTAAACCAAGATTTTCTGTCAAGATTCTTGGATTGTAAGACAGtgaacagaaaaggaaaaaacagatgaacttctttatatttttttattttcatataaatatataattatatatatatatattatttcccaTCACTTAAAATAAGTGAATTCCACAACATGAATGGGATTTTGGACATCCATgcattattacagtattattttaaaatgagagaaaacagtctatatgtaaaacaaaagaaaaaatagatggacatttattttctatggtGCAAATTGCAGGGATTTTAATGTCTTATTTTATGTGtaattattgtgaaaaataGTGTGCGTTAAAagtgaaacattaaaatgtaaaagttttcCCTGGAAAGATATGGAAACTACTACTAAACACTAAATGTGAAACTATAATTGTCTGTGCACAGAATACTGTGAGTTTTAAATGATGGCAATCGCAAACTATAATGAATGtatctgatttttcttttacaggGTTGGTCTTCATTCAGGCCGTTGCAACACTGTGGATCTACCATCTTTCAGACATGCTCTCCACATGCcagttattaaaacaattactagACAAACTCACAGGATTTATGGCGCTTTGCATGAGGGAGGCAATAATAAAACCAAGGATATAAAAATTCTTGAGTTTAccctaaaataataaaacaaacaaaaacacaaaaggggCTGAAATCTAACGCACAAGGAGAAATGTAATCCCAGCGATGCCCACCCCAGCAGCTGCAAACAGCGCCGTCTTCATTGTCGATTCCTGGTTCACCTCCTTTGCGGATTGGAAAAACTTGCAGAACCCTTCCCAGCCTTCATTCTGCATCAGCCATTCTCGTTTTTCAGAGCCAAGGTAGTCGGCAATGGTTTCGGCCAGTTTTGTACAACAGTCCATGCTTTCTCCTTGGCTGTAGAGTTCCTTTGCCAACACTCCTGTGAAGGTGAAGAGAGACACAACCCTTCCCCAGTTTAATTTACCATCTCCAACCATTTCTTCCATGACTTTCCTCAAGCTGAGGCTGGGCTCGGGTCCGCAGGTGGTGATAAAAGTGTGCAGGAGAGAGTTGAACTTGGACTGATGCTGCTTCTCCATCTCCTTGCCCAGGCACCGCATAGCCTTGGCCGTCTCGCTGGGAGGTGTCCGCTGGAGCCCCAGGCTGTGCTCGATGTAATCCCGAGCCAAGGACAAGGTCTCTTCTCTCAACCAACAGGACATTTTCTCTCACTCCACAGCTGCTCTCACCAAAATGTAGTTTATCAATGTAGGCCAATATGTCCTAtccaattattttacatttagtctGATTTTTATAATCCGTGGTTAAAGAAAAATCCAAAT

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30598 lncRNA downstream 3327 21150274 ~ 21177594 (-) True G24410
TU30495 lncRNA downstream 114188 21060260 ~ 21066733 (-) False G24335
TU30496 lncRNA downstream 114188 21063685 ~ 21066733 (-) True G24335
TU30420 lncRNA downstream 663448 20513786 ~ 20517473 (-) False G24271
TU30419 lncRNA downstream 663512 20513786 ~ 20517409 (-) True G24271
TU30623 lncRNA upstream 110217 21296378 ~ 21375032 (-) True G24430
TU30680 lncRNA upstream 525361 21711522 ~ 21718039 (-) True G24464
TU30688 lncRNA upstream 569430 21755591 ~ 21755946 (-) True G24469
TU30689 lncRNA upstream 571726 21757887 ~ 21758169 (-) True G24470
TU30725 lncRNA upstream 619959 21806120 ~ 21807061 (-) True G24503
AMCG00007510 mRNA downstream 463779 20713551 ~ 20717142 (-) True AMCG00007510
AMCG00007511 mRNA downstream 504587 20648257 ~ 20676334 (-) True AMCG00007511
AMCG00007508 mRNA downstream 562759 20606183 ~ 20618162 (-) True AMCG00007508
AMCG00007507 mRNA downstream 591722 20587572 ~ 20589199 (-) True AMCG00007507
AMCG00007502 mRNA downstream 688420 20487431 ~ 20492501 (-) True AMCG00007502
AMCG00007520 mRNA upstream 28455 21214616 ~ 21224494 (-) True AMCG00007520
AMCG00007521 mRNA upstream 71417 21257578 ~ 21264539 (-) True AMCG00007521
AMCG00007526 mRNA upstream 136071 21322232 ~ 21335390 (-) True AMCG00007526
AMCG00007527 mRNA upstream 168359 21354520 ~ 21357001 (-) True AMCG00007527
AMCG00007529 mRNA upstream 211525 21397686 ~ 21402540 (-) True AMCG00007529
TU30382 other downstream 708217 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 849110 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 1257768 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 2403283 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 3121972 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 2785510 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 3079663 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 4078171 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 4444634 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 13683274 34869435 ~ 34869807 (-) True G26961

Expression Profile