RNA id: TU30623


Basic Information

Item Value
RNA id TU30623
length 2461
lncRNA type read_through
GC content 0.36
exon number 2
gene id G24430
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 21296378 ~ 21375032 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTTTATATgtaaaaacatttatttttgagtaAGTTTTACACTGTATAGTGCCACTGAGCTACGTAGTAAATAACAGTACATAATATTTCCTCTTCTTCAGTTCAGACCTGTAGTATTAAAGTCAATGATTTCAGCAGTTTTTGTAACTTACACACACTTAGTACTTTACATGAGCATAACATCTTTGAAGGAATATACTGAACCAGGTTGTAGGGGAACACCCAGGATGCACACTAAAATGTCACAGAATATTCACAGGGTGGggcatttttgcatttgtttcattgCACTTGtgaggttttctttttcattaaaaaaaaaaagcaaactgcAGCTGAACACGCTCTATATATTCTCTCAGGTCACAAACAGCTTaagacatttacaaatgtataatatagcTGCTGCCATGTGTTGACAGACCAAAAttaagatacatatatatttttaagaactgAAAGTGGTTTTAATGGGTTTTACAAGGCTAGATCATTTTACATCAGAGCTATGTTTCCACAACATGTTTGTACAGACATCATATGTAAAACGTCccatggtgaagtggttcaagcTTTCACATTCAAAGCATGCAAATGTTCCTCTGTGCAATCCAGTTGATTTGTATTAAACAGCATGCTGCCTTtcttatgtaattatgtaagaTGACCTAGACAGTTCACAGCTAGACTCTATATCAATGCTCAACAAGTGCCAGAGTGGAAAATTATACTCAGCTGCATCTGAAAATGTGGTCATGTTTTACCGTTTGTTAGTTTTTACTGCAGTcatcaatgtttaaatattctttTTAGAATATTTGTCTAGGAAGAGATTTGTAGTATTGGATTTGTGAGTACATGTCTTCCATTGGCATTTTGAGAAACTGACCacttttttccaaataaaagaaaattatgTTCTTTCTTTATCAACCATAAAAGGTGAAGAATCCCAAATACATATTCTGAAAGGAATTACAAATTGTATATGAAAGATGAACAGCTGTCTTTGGCATATAAGAATAGCTAccattttcaatttcatgttGATGGAGTGAACGAACTACAGATATCATTATGATCATTAAgactttatatttataatacttaaaatcaaattaaggGTATTTTGAATACTACGTCTTTTAAGACATGGAGGGGGGGCGGGGAATTGACAGTACTTGGTATATTTTTCAAGAAATTACTTAAGATACTTTTGTTCCCTCTTCCCCACAGAAGGGAGCAAAAAAAACTCTTGAAACTCcttcacagagaaaaacagTGGAGACATTTAAGACAAAGAGAGTTTGATCGATGCACGTACAGCGTGGCTAAGAAGGACAGTCCACAAGCTGCTTTAGTATCGCCTACATCTCTCAACTAGCCTGGAAGAGTCGGAGAGAAAAATAGCATAGAACGTTCAAagtttttcagataaccatCACTTTGTTATATCCTTGTGCTTTCAAAATAAGTGCAGACTGGCAAGCATCTGTGCAGCTTGTGTTTTTGTCATCATCACAGCACACTCTGACTGTTTAAAAACATCACAGACTGTTGACCGTGCAGGAAAAGGGGATGTGTGAAACCAGCACTGTGTTAGTCTATGCAAACACTACTTTCCTCTGGGAGTTCACTTGGTACTGCAGCAAAAAGTGTTCAGACTACGTCCATTCTTACTGCtgacaatacaaaacaaacaaaaccaaactggcttatattgcaataaaaaaacaagccaaTACAACACCCTTCAGATCTGTAAAGGAGCAGCTGTACAAAAAGGCTTGCACATGTATACAGTTCAACCTTTTAAGTACAACACACTTAACAAAGGGAGTGTCCATTAAAGATATGGAATGacagatacattttaatcacattctaaaaacaaagaaaaaatccCGATGTAacataacacaaaaaacatatataatattctcaacatttgtaaaataaccaTTAAGAACACCAGCTGCCTGGTGAACCAGCATCAGCATGATtgttagactttttttttgtttttttgtttttttgtttttacaatgctCTCAATAGctaggaaaacaaaccaacacaaacaaaatgatgtTTAAAAAACTTGTGCAAAATCCAATTCACTACTCTTGACAATGTGGTTACGTTTTCTTTCCTATCAGAaaagacagaacaaaacaatgGTGCTGCTTGAGAGGTTTGACGCAAagggaggtggggtgggggggtgaagaaagaaattcaaattatataacTAAACTAAAATCTATCTACGGCTATAACATTGGAGAGGGCTATTCCAGTCATTTCCCTTCTACCCAGACAGGTGATCTTTGAGGATGCCTTGCCCTGGAGTTTGGCACAAGACTTTTGCAGTAGAGCTGTAATAATTCCACACGATGCAACACAGCATTTGGCAGGCTGGCACTCCAGGTTTACGCATCTCCCTCTACTCGCCTCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30594 lncRNA downstream 110217 21180921 ~ 21186161 (-) True G24409
TU30596 lncRNA downstream 114285 21180921 ~ 21182093 (-) False G24409
TU30598 lncRNA downstream 118784 21150274 ~ 21177594 (-) True G24410
TU30495 lncRNA downstream 229645 21060260 ~ 21066733 (-) False G24335
TU30496 lncRNA downstream 229645 21063685 ~ 21066733 (-) True G24335
TU30680 lncRNA upstream 336490 21711522 ~ 21718039 (-) True G24464
TU30688 lncRNA upstream 380559 21755591 ~ 21755946 (-) True G24469
TU30689 lncRNA upstream 382855 21757887 ~ 21758169 (-) True G24470
TU30725 lncRNA upstream 431088 21806120 ~ 21807061 (-) True G24503
TU30743 lncRNA upstream 567920 21942952 ~ 21943671 (-) True G24515
AMCG00007521 mRNA downstream 31839 21257578 ~ 21264539 (-) True AMCG00007521
AMCG00007520 mRNA downstream 71884 21214616 ~ 21224494 (-) True AMCG00007520
AMCG00007510 mRNA downstream 579236 20713551 ~ 20717142 (-) True AMCG00007510
AMCG00007511 mRNA downstream 620044 20648257 ~ 20676334 (-) True AMCG00007511
AMCG00007508 mRNA downstream 678216 20606183 ~ 20618162 (-) True AMCG00007508
AMCG00007529 mRNA upstream 22654 21397686 ~ 21402540 (-) True AMCG00007529
AMCG00007530 mRNA upstream 49901 21424933 ~ 21453417 (-) True AMCG00007530
AMCG00007535 mRNA upstream 385636 21760668 ~ 21769423 (-) True AMCG00007535
AMCG00007545 mRNA upstream 436448 21811480 ~ 21880303 (-) True AMCG00007545
AMCG00007544 mRNA upstream 523335 21898367 ~ 21918778 (-) True AMCG00007544
TU30382 other downstream 823674 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 964567 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 1373225 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 2518740 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 3237429 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 2596639 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 2890792 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 3889300 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 4255763 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 13494403 34869435 ~ 34869807 (-) True G26961

Expression Profile