RNA id: TU30680


Basic Information

Item Value
RNA id TU30680
length 4483
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G24464
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 21711522 ~ 21718039 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAAAGAACTAAATCttctgcactgaaatattttatttcaactatacatgctgtgttaaaaaaacaaaaaacataacaaaaaaacaatgtacgtaattatttacacattcacaGTACAAGTTTACAAGGTATCTACACATGTTAAAGTACTCTGTAAGACATACAACAACTGAACGTCAGCTCTGAATTTGcacagtattaaaaacaaaaagttgacAACTCTGGTTTATTTGCACACAAAgcattttaactgaaatgtaaaggCTTGGATAAGTCAAATTGCAACATAAAGACAGTATGAATTCACATTGCAATATACAAGGCAGCTCAACATTACAAACCTTTGAAGATGGATCACGTGTACAGTTTTCACTTTGTACAAAAACTGGTTATTAGCAGGTACAGACAACTAACTTAATGGAtttacagttttgaaaatgtgtttgtaaacaAAATTCAACTTTGGGCTCATATAGGCAACAAAGCGTACTCGGTCAGTCAGAATGAAGCTATTAACATTGGAACATGGGAACCTTCCCTGGCTTACTTCTATCTGCTCTCAAGAGTGAAGGATTGTACGTCATTTTCAAGACATGGTGTTCAACCCTCCTGTCCCACACATCTGTGATATCACTGCTGTTcgatatatatatcttttttaacTCCCTGATGAAAATCTTAAATTTGAGACaggcatagttttttttttctccttatcTTTTTATCTGATTACATAAATAACACCCCCCCACAATATCTCTGATTCAAGAGTTTCATAAAAGAGCAATGGAGAATCTTGCACAAGACAAATATGGAGAACTTAAAATGGAATGCTACAGAAAATGCTGATCTTACTGATAATTGAAATGCTTGGATTTACTATGCTTTGTTAATTCTTGAAATGTATCACTTTCTTGAAGCAGACCAAATCATTGTTCTTATAATGGAGCTTATTATATGTCTTGCATTATGGAATCAAGTCTGATATTGTTTCAGATGGTAATTATACATATTGTGGTTACCATTTAAAGTGTATGTTACTACTCCCTGTTATATTAGTGTTTTACATTCACTGAAGGGTACTTCAGCTTTGCAAAGTAGCAcctctcttaaaaaaaaaaaaaaataataataaaacatgactttaaccagaaaaaaatgaaaaagccagTGTATTCTGCTTAGGTCAGATATTCAATACTCTTATAATGGAATGTTTATAACTAGAGTTGGCtgttattttgtacaaatgCAGTTTTGGTACTTGAATTTGTtgaactattaaaaaaaaactagtttttgtataataaaatgttccaACTGGCACACTGAAAGTTTAATGCTCAAGAACACTtgtcattttcaatatttataacCATGTTCATTGAATAAGGCACACAATGCACAGATTCAGGTAAACttcccaaagaaaaaaaaatatttacactttgTCATTACCTGCATGACCTTTCGGGACACTCTTGGTACTCTTTCAAGATGattgcacaattattttttcaagggATAGCTGCTTGACAGATTTTGAAATTCAATTACACCTCTGAATcagttgttttaaaagcattagaAACAAATGTGAGCCCTGAATCAGTACAAAGGCAGTGTTATTTTCTTAGTTCTCATGAACGGTGAGGGGGAAAAACTATTGCAACAGCCATGCATTTTGTAGACTCACTCTGTATGAGCTTCCCCAAACATTCCAACATGAACTGCTCTCCCCATCCCTGCCACTCCATCCTGGACCTTGTCTGAGCAGAGATAGGTTTGGGACTGTGCCCTGCTCTGTGGCACCAGTTATCCCCTGATAACCAGTGTGATATCATCAGTCTCACTTGCCATGTGAACTTAATGGTTAACCAAATGGTTAAGTCAAGTCAAGGCTCATAGAATTGCCCTTTGTGCCACACAGCTCCCACAAAGACAGCACAGAACGCTTTACTTAACTCCTCGATTCAAGAACTGGAGCTTCAATTCACAGTGGCTTGGCAGACTTAAGAGAACCAAAATGCATATGTAAATGGAGAACTACAGCTAGATAGCAATGCTTTTGAGtccaaaatacacaaataacttTAACCAATAGCAGCAAGTAAGTTTAGTAATTTCCCAGTGAGTTAAAATAGTAATCCAAGTAGGCACCCTGGACTGATCATGTACACAGATAACCTCAGATTATTGCCCTCAACAAACCTGACGTTAATGAATCTGAGTCATCTGCTGTTTTGTTGTCCGAGTATAAGGAGTTGTTCCTGTCTTTAACTGACTGCACAACAGACAATGTAAGTGCAccctaatgtgtgtgtgcatacttTACACACAGTATTAGCATTAGTCTGTGACAGACATTCTACTTTATATGAAATGTCTCTGCTAAAATCTTtccataaatgcattttttcagtgTCAAGGCCATATGCTATGTCTAAACATCAAGTTTTCTGATATTTCGTGCAAATGGCTCGACAAATGcatactttttttcttgttttataaaGTTCACATTTAATGGGAAGACAATGCTCAGTGGCAGTGAATAATGGAACCCATTCTTCAAGTATTCTTGCATGTAAAATCTCTTAATGCCGGAATGGCATAACTGcataaaatgaacaattaagCTCCCCCATGCAGTTTGTTTCCCCCAACTCCAGAATCCAGACTCACGAACGCAACAAACGTCACGACCACTCTGTGTCTTTGCATCCCAGAAAGAAACCCGGTCACAGACCTTCGGGTTTtagtttgcaaaaaaacaaaatcgagAAGATGCTGCTGGAAGTAGCTTCTTTGGCCACTTGCTTTTCCCTTATTCGAGTACAGTCAGTCTGGACTTCCAACAACATCAGGAAAACCCTCAGCAGGTCTTTAACCCCCATGTAACCCCCACAGTCCTCTAACAGAGTCATCGTACACCTTTAGTAGCTGTACTTGTTCACTGCTCTGATTTGTGTAGTTTGGGGGACAAACCCATTGGGTTTAGGGGGGACGTCTGGCTTTAGAGAGGGTGTCCTCTTGATTCCAGTACGTGGAAGAGAACCTTGCCCACTGTAGCTACTTTGTCTGGATAGTGAGGGCTGCTGATGAACACCAATAGGTGCTCCATGTGAGTCTACTCTGGAAGGTGGTGTGGGAGGAATGTACCCCCCTCTGTTCATACTTGGCTGCCTTGATAAGACAATGCCATTTGGTGAGTTTATGTTTTTAGGAAGGGCTGATATGGAGTGCCTCTGAGAAGAATTCCGGTGATAGCCCCTCTGTCTTTCCAGAGTGTTCATTTGCATTGTGGGAGTGGTTGGGGTAGTAGGCACGTCTACCCTCTTTGTGGGGCTGTTCCGCGGTAGGGTGGAGGAGGGAGAATACAATGAAGCCTCCCTGCTGGGAACCTTTGGTGGTATTTCAGTCATGTTTGCCATTGGTTCCAGCATCATGTTTTGGCGGGTCATAGGAATATCGCCCAAAATAGCTTTTGGGTTGGTGTTGGTTTCATTTAAGTGCTTCAGAAGATCATTCAGGGTATTCCTTGCATCAACTGAGCGCCTGTGGTCCTTTTTGCTGGATTTACTAGACGGAGGCTGATCGATATTTTGAATCTTCCTTTCTGATCGGAGGACGTCTGCATTGGAAAAGGAAGCCCGGTAGTCATGGGTGGCGTTTGGAAGAACAACAGCACTCGGAATGTGAGAATGCCCCATAGGAGAGTGAGGAGGAGGGCTAGAAGGGAAGTATTGAGGACTTTTGAGTGGAGATTCCTTCCtggaagcatttattttgttgtgagaTTTTTCCCACTGATTTTTGATCGGTTGGAGGCTCTTCTGTTGGAGAACTGGGGTAGACTCCGGAGTGGGAAGAGCAGCAAGTTCTGGAGGCTGGCACTGGCTGCTCAAAATCATTGTCTTTGTGTCTCCATTGGGTGGCATCTCTTTCCCGTTGCTCAGCAGATTTGTGTACAGCTTAGGAGAATCAATATTTTGTTGGTATTCCTTCACAGGGCTATCAAACAAGCCGTTGAGTTTAGCAAAGCTTCCACTGGAGTCTGTGCAAGACTGGGCTGATTCGGCGTCCTTGTGGATTTTTCTTGATTTCCGTAAGAAAGCATCCCGGTAGCAGTAAACTATGACCCCAGCGATGAACGCTCCCAGTAGAAAAGCAGCAAAAACGCAGGTGATCAGGACATTCATGTGGACCATCTGGTTAGACTCCCCTGACTGCACCTCCCACACACTTTGGGGCACCTGGTAATGAATCAAAAGAATGTGAAGTGCCTGGGTCATCTTGGAGCACAAATTTCCTTGAACCAGACAGTTCAGGTTTCTGAGAGCCAATGATTTGGGGTGATTCTATGAGGCCAGATGCCACTGTTGTGACAGTAGGTGATGACAACTTCATGTCTGTGGTGACAAACACATTGTTAACATTTGGTACACATGGTGAATAAGACATACCTTTAACTACCATGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30623 lncRNA downstream 336490 21296378 ~ 21375032 (-) True G24430
TU30594 lncRNA downstream 525361 21180921 ~ 21186161 (-) True G24409
TU30596 lncRNA downstream 529429 21180921 ~ 21182093 (-) False G24409
TU30598 lncRNA downstream 533928 21150274 ~ 21177594 (-) True G24410
TU30495 lncRNA downstream 644789 21060260 ~ 21066733 (-) False G24335
TU30688 lncRNA upstream 37552 21755591 ~ 21755946 (-) True G24469
TU30689 lncRNA upstream 39848 21757887 ~ 21758169 (-) True G24470
TU30725 lncRNA upstream 88081 21806120 ~ 21807061 (-) True G24503
TU30743 lncRNA upstream 224913 21942952 ~ 21943671 (-) True G24515
TU30786 lncRNA upstream 287695 22005734 ~ 22009433 (-) True G24551
AMCG00007530 mRNA downstream 258105 21424933 ~ 21453417 (-) True AMCG00007530
AMCG00007529 mRNA downstream 308982 21397686 ~ 21402540 (-) True AMCG00007529
AMCG00007527 mRNA downstream 354521 21354520 ~ 21357001 (-) True AMCG00007527
AMCG00007526 mRNA downstream 376132 21322232 ~ 21335390 (-) True AMCG00007526
AMCG00007521 mRNA downstream 446983 21257578 ~ 21264539 (-) True AMCG00007521
AMCG00007535 mRNA upstream 42629 21760668 ~ 21769423 (-) True AMCG00007535
AMCG00007545 mRNA upstream 93441 21811480 ~ 21880303 (-) True AMCG00007545
AMCG00007544 mRNA upstream 180328 21898367 ~ 21918778 (-) True AMCG00007544
AMCG00007540 mRNA upstream 207910 21925949 ~ 21942925 (-) True AMCG00007540
AMCG00007539 mRNA upstream 234646 21952685 ~ 21973858 (-) True AMCG00007539
TU30382 other downstream 1238818 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 1379711 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 1788369 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 2933884 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 3652573 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 2253632 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 2547785 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 3546293 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 3912756 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 13151396 34869435 ~ 34869807 (-) True G26961

Expression Profile