RNA id: TU30786


Basic Information

Item Value
RNA id TU30786
length 1297
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id G24551
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22005734 ~ 22009433 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TtttttgttaatcattttatttcagattatgTGAACAGACCAGGAAGGATATTgctgaaatacagaaagaaaagattCTCCACAATTTACAGATAAATCAGATAAAAAGGGCAATAACTTGTAACCCTACAGAAATCAAGATCAAGAGTGAGATGCTGATGCACAAATGGGAACATGCAGCTTTCTCCAGTAGTCGGCATCAGAAAAGGGATGAGCGTGAGACTGAAGCTGAAGAGACAAAAAATGCAGACGGCAATTGTGAAGTTTCTCCAGGCAGAGGGGAAGTATAGAGTTACACAATTGTATTGTCACTGGTCGAATTAAAATGGAGCGTGCCATGCCTTTATTGCCAAATAGTTTGTGTCagtataaaataatcataataataaaagcagaaatctACCAAATGTGCTTCAGATGTCATAGAATCCTTTCAATAaacttgtttaattttgtttactcACATGAggtatatttctttattaactTTCTCTCCAGTAAAAATGCTCTGATGTTTTTATCAGTCggtaaattataattaatttatttaattattgcttCCATAGCAATCCATGTATATCTATATGGTTAAATTCAGTGGCTTTAGCCAATTATCTAAAATCTATGTAACTCATGGATTTCAACAaatcaaaatagtttttatagtaatagtttttaaaagtgATTGATAATGACATGATTTTTTCTCCATATATTGTGTAGGACAAAAGCCTTTATTGTGAAAATACCctcatttccatttcatttctgAGAAACCAAAACCATGAAAATCCCTTTCTTTCAGTtaccattattaaaatgttttttagaaGGGACCAGACTTCCTTCCTGTACGTTATGCACCCAGATATGATATCAGGTAGAACAATCAGTAAACATTTTCCAATGTAACAAGATCCAATGAACCGATCCCATCGCTTTTCTAGGCCTCTAAAAAGATGCATGCCCCTCTACCAGGCTTTGTGACGAATAAACTTTGCTTCTCCATTGCTGCTCTCCGAGCATCAGGCTTGTAATAGGAGTCACGGACACTCTGCAGGAAGGAATCCAGCTTGTCGTTCGGTACCATTGACACCGTGCACCCTCCCCAGCCAGCTCCAGTCAGCCTGGAACCAACAGCACCAGATTCTCTGAAGACGGAAGGGACACAAAGAACGCTGTCACACAGGGAGCTGGTTctacacactgactgagaaGGTCCATCTCTCCAAATGAGGCCATCAGTGGCATTTCAGTCAAGGTGAGAAGGCTTGAACGTACTGTTTGagaatcaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30743 lncRNA downstream 62063 21942952 ~ 21943671 (-) True G24515
TU30725 lncRNA downstream 198673 21806120 ~ 21807061 (-) True G24503
TU30689 lncRNA downstream 247565 21757887 ~ 21758169 (-) True G24470
TU30688 lncRNA downstream 249788 21755591 ~ 21755946 (-) True G24469
TU30680 lncRNA downstream 287695 21711522 ~ 21718039 (-) True G24464
TU30830 lncRNA upstream 121956 22131389 ~ 22133981 (-) True G24579
TU30831 lncRNA upstream 121956 22131389 ~ 22133981 (-) False G24579
TU30913 lncRNA upstream 251414 22260847 ~ 22262493 (-) True G24640
TU30958 lncRNA upstream 346017 22355450 ~ 22358446 (-) False AMCG00007565
TU30974 lncRNA upstream 422634 22432067 ~ 22432313 (-) True G24687
AMCG00007541 mRNA downstream 23813 21976293 ~ 21981921 (-) True AMCG00007541
AMCG00007539 mRNA downstream 31876 21952685 ~ 21973858 (-) True AMCG00007539
AMCG00007540 mRNA downstream 62809 21925949 ~ 21942925 (-) True AMCG00007540
AMCG00007544 mRNA downstream 86956 21898367 ~ 21918778 (-) True AMCG00007544
AMCG00007545 mRNA downstream 125431 21811480 ~ 21880303 (-) True AMCG00007545
AMCG00007542 mRNA upstream 33022 22042455 ~ 22048365 (-) True AMCG00007542
AMCG00007543 mRNA upstream 40320 22049753 ~ 22068693 (-) True AMCG00007543
AMCG00007551 mRNA upstream 60209 22069642 ~ 22118102 (-) True AMCG00007551
AMCG00007550 mRNA upstream 135316 22144749 ~ 22153500 (-) True AMCG00007550
AMCG00007552 mRNA upstream 168033 22177466 ~ 22181121 (-) True AMCG00007552
TU30382 other downstream 1533030 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 1673923 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 2082581 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 3228096 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 3946785 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 1962238 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 2256391 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 3254899 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 3621362 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 12860002 34869435 ~ 34869807 (-) True G26961

Expression Profile