RNA id: TU30811


Basic Information

Item Value
RNA id TU30811
length 2488
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G24570
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22144839 ~ 22148238 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agtttattttacatatcataAGAGACTCTTCATATACATTCTTCAGTGACAATAAATACTCCAATTATGATAAAGAGCTTCTTGTACAGCATTGACTGAAGAACCGTGTGAACTTGAGATAAGTTTATTACATGACAATTAGGCCTAGATGTCCTCTGCAAGTGAAGCTGCAATGTTGCTGAAGTAATACAGATTAGCTTTGCAAGGTTATACAAAAGGATGTGGGTGATTGGATGAATCAGATTTGTTGGCAAAACCTTAAGTGCTATAATTGTgttcacacaacacaataaatatACCTCAAGTTATTCTTAACAAGCAGATCAGTTGCAAAATCATATCACTTGGAAGTACAGGAGCAATTCAGATTGTGGAACCAAGGAATGCATTCGTAAAACAATTTTCAGAAATTGACGTGCATCAACCTGGAAATCAAAGTTACCTGCCAAATTGCCTCTAGTACTGGGAGCTACGGCCAGGTAAAGAAGATGTTCCCATATGCAGGACCGTCTTggcaaaattgtattattagcATTTAGACCAAACCAGAACACTTAGGTGAGTGAGATTGTACCGCCATGCATCTCCTAGCATGTTCTAAATCTGCATGAATTCTTGCTAGCCACAAAAATGTACTTGGGAGAGGAATGCTGGTATGTGGCCCTCTTTTCTTGACCTTTAGAACTGATAAGTTACCCTTCAACCTAAAAGACACAGCATATGGTATTAAGTTTTTAAGAACagtctgtgaaaatgtattgtggaATATCAGAGGAACCTCCGTTAGAAAGTATATgacaaactgcaaacaaaaagtTTTGTGGAGCAGGTGCAGATGCTATAAATGTTTGGCACATTAGCACCATTATCCACAGGACAGGCCTTTCTAGTGCATTTCGTGAGACCTTTATACAGGGATTGCAGTGGAGCACCAACCATGTGATCAGATGGAAGTAGTCCAGGGTGTCTGGGTACATTGCACATCATCACTGTCTTTTTGTCACCACGGACCAACAGGCCAAACCTGTGCAGGCAGTTACACAGTATCTTCattcatgtgaaaataaattctgGAAAAACACAGGTTGTTagaaattaaatcattcataTAGTGTAAGAAATTAGgaaggggattttttttaaaggaaagattacaaaagaaaattcatatttacacattacTCTGCTTCTTAAGTAAAtggtgcattttaaaatgttacagaatcCCATccactgcaatttaaaaatcaagaggattcaatttaaatgtaaacattaatcAGCTTCGACTAATAAGTTGCATGGCACCCAGTGTTCACAAAAGTTGCAACAGTGTCAAATTGAATTTCTACACAGTGTTCATATAAAATCAACTCTGGATTAAACGTTGGTGTAAAAACGTATTGTAATACTATTTACTGAATGTACATCAAATGTTGTCATATTGTTAGTGCATTATTTGGATATCTGCATCCTAAAAGGGTACAGGGTACACcattaaataacacactttTGTGCTGTAGTGTTGTGTCAGAATAAGTAGTCACTAAATTATGTCAGTACAAACAAACGATATTCAGACATACCTAAAGACTCTTTGGATTAGATATATGCATTTCGTTATACAAAGttcagaggagaaaaaaaaaaaattaaaacaaaaaccaacaaagaaatCTCCCAATCTGAGGTAAATATCTactgttacaaaaaataaaatgccaggTCCATTAATTTTCAGTAAAACTCCTTCATAACAACACACTTTTTTCCTTACTGCTAGCACCTGGGCCTTTACCCAGATCCACCCATTCCACCCAAACTACGGTCAACCAAGAATGGAAAAACTGAACACTCCACTGCTGGATTTCAAAAGCCTATGAGAAACCCCTTGATGGTATATGGTCTATCAGGTAAGAACAGTCCAAAATTAGAGTGTAGAAGATATGCATGTAATACTGGCAAAGCTGTTATTGACAGTTTTTCTTGAGGTTAAGgagttaaattaatgaagatATAACACCAGGAGTCCATAGGTGTGTCCAGGATGTTAATAAAAAGGGGGGTCAAAGTtagtttagattttaaaatagaaagcCTTGAATCCAAAGGTTAAAACACCTTAGGAGAATATCACTGAAGCATATGCACCCCATACTGGAATTCAGGTAAACATCCGTTGGTTATCTTAGTGGAGTTATTGTGTGTGGCTGCAGTTGCATTTCACAGGCTTAGTAACAGTGTCTAAGAAAGTCATCATTTTTTCTTGAACTCCTGTGAAAGAACCAAAACTGCTTTTGAGATAACAGGTGTGGGCACCGTGGCTACAGACATCAGGCAGTGGATATTTGACAGTTTGTACATCTATTAGGAGACGTCTGTCTGTAGCACTGTAGCTGAACTGTGCACCTATATATTCCATATGTCTTGACGAGGATAAGTCTGGCCTTTGACTGGACTTCTTCCCATTTCGTTGCACTGGATGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30809 lncRNA upstream 10135 22132035 ~ 22134704 (+) False AMCG00007547
TU30569 lncRNA upstream 746792 21386225 ~ 21398047 (+) True G24384
TU30470 lncRNA upstream 1263915 20880546 ~ 20880924 (+) True G24311
TU30469 lncRNA upstream 1268054 20876584 ~ 20876785 (+) True G24310
TU30397 lncRNA upstream 1650834 20492904 ~ 20494005 (+) True G24256
TU30852 lncRNA downstream 41899 22189245 ~ 22203939 (+) False AMCG00007554
TU30854 lncRNA downstream 41899 22189245 ~ 22203939 (+) False AMCG00007554
TU30853 lncRNA downstream 44034 22191380 ~ 22203939 (+) True AMCG00007554
TU30862 lncRNA downstream 116495 22263841 ~ 22266409 (+) False AMCG00007553
TU30934 lncRNA downstream 193390 22340736 ~ 22343616 (+) False G24654
AMCG00007547 mRNA upstream 10125 22131573 ~ 22134714 (+) True AMCG00007547
AMCG00007548 mRNA upstream 15362 22123647 ~ 22129477 (+) True AMCG00007548
AMCG00007537 mRNA upstream 92218 22050281 ~ 22052621 (+) True AMCG00007537
AMCG00007536 mRNA upstream 110931 22033242 ~ 22033908 (+) True AMCG00007536
AMCG00007538 mRNA upstream 137218 21984244 ~ 22007621 (+) True AMCG00007538
AMCG00007546 mRNA downstream 6331 22153677 ~ 22158549 (+) True AMCG00007546
AMCG00007549 mRNA downstream 14858 22162204 ~ 22174755 (+) True AMCG00007549
AMCG00007554 mRNA downstream 44057 22191403 ~ 22203951 (+) False AMCG00007554
AMCG00007555 mRNA downstream 57430 22204776 ~ 22216240 (+) True AMCG00007555
AMCG00007557 mRNA downstream 85181 22232527 ~ 22261853 (+) True AMCG00007557
TU30494 other upstream 1078056 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 3088706 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 3574375 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 3852501 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 3936531 18207078 ~ 18208308 (+) True G23698
TU30868 other downstream 134354 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 1042114 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 2044875 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 5936476 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 6305663 28453009 ~ 28454707 (+) False AMCG00007735

Expression Profile