RNA id: TU30830


Basic Information

Item Value
RNA id TU30830
length 2320
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G24579
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22131389 ~ 22133981 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cttcaaaatgaaaatctttatttttacaccaatatatatatatacaatatgcattttgttttacataatacaatCACATGTAAAGTGAACAATACTTCTGACTGCTAACCTTTGCTGTTTCACTAGGTGTGCGGAAATTGCTTTGAAAGTTATAGTATTGTACTGGAATCCTCATGTTAGATGATCTACTACAGTCCCACAGAACTGTGCGTGATCAGACCCTACCAATGTAGCAGAAGCATTTCCGCACACTGCATTTCAGTGAGTCTAGTCTGTGCAGAAATGATTCCGTTAGATTGATAGGGTGCAGGCAGAGAGTGTTGGACTCGGAGACCCTAAGGGCTGGCAGGTACTTCCTCACTTGGTCATTTTCTTCAGCATCTGGAGCTCCTCCACAGGCTTCCACTGCTGGTTTATTGTCATGAGCTACAGGACAgaaaggacaaaacaaaaaagaaacacgACACAAGACTATATTTTCCCTCacatacaatataatgtattttatgaagtTGTGAAAGTGCAtagattttgtaaatgtaaaatattctccCACGAAGCTAATTGTTAATACCCCCAGATTATGCTTAAAGGGAAACATAAATTGAGAAAATACCCATTATTAGAAACAAAGTGAACctctaatttaaaaatcaaaaataacattaaaatacctTTTGGGGTTTTGAAGGATCCAGGTTGTCCCATGGCTCAGGATTTCCAGACTTGTTAATACtagaatgaatgaataaataaataaataaacgtgttATATAACAgagtaattcattattattattattattattattattattattattattattattattattattatacggCGGCTGCTATTTTATCTGATATTTACTCCACTGTGTGTCATTGCCCTACTTCTCCACAGCAGTCAAGGTCAACTGAACAGGCATAaaggaattaattttaatatttatatacctttgtgttttttttggcataGATAACTCTTCCGATTGTTcgttatttaatttgactataattaaaatatgtggaTTTGTTTCCTGGTAGGATAGGCGCTGCCTGTGTCTCGGTAAGAGAAATGTGCGTGCAgaatcaacaaacaaaatagaaaacagcAAGTCGGCAAGACTTATTCACACTGCATAATCACATAACTTCTagaatttaaatacacacaaaaaaaaacagcagtcaaGAATAACTTCTTACATCACGTCTGTTTTTGTCATCAAGAAGTAAATGGAGGCGGTGGTAGCACCAGTTGCTGCAATGGCCATAAACCCAATTAAGGGAAtaCTTCTTTCTTCTTCCTCAGCATTTGAAAAAACCCaaaagacatttttgttttcctggtgATGCCTACAAAAACATAACATCATAAATCTATCAGTCCATCAATcaattcataaaatgtatattggaatAGTAATGATACATTGGTCTAGTAGCACAAAACACTGTCCCATACATACGAGTTAGTTCATCTAAGCAACAGATTATATAAAGTAAAGATGACTTCCCCAATGTGGATCAGCAAGGTATATCAGCAGTGATGCTTACCTTCCACTGGAGATGCCTACAGCTCTGTAAGGTGTCACTGGGAGTTTTGATCACTTGTTCCCGCCCCTCCTCTTTTTATATCGTTTTTGGAAATGCAGACGAGGTCGAAGTCACGTAGACAGACtcttactgtatatattgaattcaaaacGCAACTAAGATAGGTAGTGGGTTGATACAACACCCTCATCTACTAACTGTTGCCATCTCGGTGTTTCGATAGCGCCCCCTCTCGGTGAAAGCCCGAAGTTCGCCTCACTCTAGTCGCGGTGCTCTGCAGTGCGGTATAGATGCCGGGTCCCTCGGCTAATTTTGCtcatgtatgtttattattatatcatgGAGACCAGAAAACGGACAGCTTTACATTACATCACATTTTTCTCGTTCATCTGTTACGAAAGTAGAGACTTTGGGATCGTTTAATCTTTCAGAAAGCTTTTCTTGCGACTGAATGGTTGCAACATGTTCTCTGCTCATCGATTCGGTcttctgtaaaatgaaaaagctgtAAAGCTATGTGATCAGGTATGTGTTTGAGTAACGTTGAGGccatatatgtttttgtttaaggaTGTAGGTTAAAATAACATGtaaccattatatatatatactttttacaaTTCATTCATTGGAATGTAATGTATAGAATAAAATTGAACGTAATGGTGTTTGGTTgacttttttttcatatgtatattatttgtattatcatcatATGTGTATTCACGATGACATTGCAGAGGACAGTTGAGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30786 lncRNA downstream 121956 22005734 ~ 22009433 (-) True G24551
TU30743 lncRNA downstream 187718 21942952 ~ 21943671 (-) True G24515
TU30725 lncRNA downstream 324328 21806120 ~ 21807061 (-) True G24503
TU30689 lncRNA downstream 373220 21757887 ~ 21758169 (-) True G24470
TU30688 lncRNA downstream 375443 21755591 ~ 21755946 (-) True G24469
TU30913 lncRNA upstream 126866 22260847 ~ 22262493 (-) True G24640
TU30958 lncRNA upstream 221469 22355450 ~ 22358446 (-) False AMCG00007565
TU30974 lncRNA upstream 298086 22432067 ~ 22432313 (-) True G24687
TU30996 lncRNA upstream 312389 22446370 ~ 22448954 (-) True G24705
TU31016 lncRNA upstream 384441 22518422 ~ 22521084 (-) True G24721
AMCG00007551 mRNA downstream 13287 22069642 ~ 22118102 (-) True AMCG00007551
AMCG00007543 mRNA downstream 62696 22049753 ~ 22068693 (-) True AMCG00007543
AMCG00007542 mRNA downstream 83024 22042455 ~ 22048365 (-) True AMCG00007542
AMCG00007541 mRNA downstream 149468 21976293 ~ 21981921 (-) True AMCG00007541
AMCG00007539 mRNA downstream 157531 21952685 ~ 21973858 (-) True AMCG00007539
AMCG00007550 mRNA upstream 10768 22144749 ~ 22153500 (-) True AMCG00007550
AMCG00007552 mRNA upstream 43485 22177466 ~ 22181121 (-) True AMCG00007552
AMCG00007558 mRNA upstream 142130 22276111 ~ 22288236 (-) True AMCG00007558
AMCG00007566 mRNA upstream 198085 22332066 ~ 22337074 (-) True AMCG00007566
AMCG00007565 mRNA upstream 206618 22340599 ~ 22357410 (-) True AMCG00007565
TU30382 other downstream 1658685 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 1799578 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 2208236 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 3353751 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 4072440 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 1837690 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 2131843 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 3130351 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 3496814 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 12735454 34869435 ~ 34869807 (-) True G26961

Expression Profile