RNA id: TU30913


Basic Information

Item Value
RNA id TU30913
length 1530
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G24640
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22260847 ~ 22262493 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atttttaattttattagattaaatgatatacaaaatgtatacagtaataTACCCATAATGTTTCACAATTCCCCTTCATAAAATAATCTACAGTTGTATCATCTATTTAGTTCGTGCCAGATAACTATCTATAAGATACACTAGATTAAAATATGCtcttgtaatacatttaaaaatgacaatagTACctttgtaacataaaaaaaactctcaCCTTTAAACAATTTTTGGTGGACAGAGTTCCTTATTGAGAGTTCCACAGATTTTAGGACTATTAAATTACATACACCGTACTGAAAAGGTTGCATTGCAATCTGCCCATATTATACAAGATTTTCAatccatatgtatttataatgtatgtacCACAAATACCATAATACATAAATTTCTACatgattttacaataaaaaaatggattACGTTCTGCATTAGATAAAATTCTTGCAGAGATTGAAACTGAACAGGTTTTCCCTTACAAACCTGctataaccaaaaaaaaacaaacacaaaaacaaaaacaatgcacttaaaatagctttttcttttatacaaGGCAACTTctcataattcataataaatattataccCCTCTATACAATGAGATTGTACCAGTTGATAGCCACTTTATGCACTATTTAACATATaaacgtatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcccatttacacaattaaaatcattatgGTTCTTCATAATTGCACTTGCTTACTACTTCTGTGTAGCCAGCAATTTGACTAAAAATGCCATATTTTGTTACACATACTTTCTCTCGTCTACTGTGCAGCTCTAAAGATCGAGCTTAAAAGTTCTACTTTTAGATTAAATCATGCAgtgcatgaaaaaaacaaaaacaaaaaacatactgcCCACATGCACTTTCCACCCTATGCATTGATATGCACTGCTTATTAACACAaaagtataaatgtattttctccccCTTCTTTCTTGAACTGGCCATTGCTTTCATAGCATCAGACTAATAGAGTGCTTTTGTTCTTTGGTACCTCTCAAGGGACTCGAAGCGTCAGGTGTGTCATCTTGGGGTAAAGTAACTTTGTCAGGAGTATAATCGTTCCTCTTTAGATCTAATACCTGGAAGTTTGAGTTTTCTGCAGCAGGAATTACAGTGATGTTTAGTACGGAAGTTTCTTATTGCATCATCTCCCAGATTTGCTGGACCAAATATCATGTCATAAGATCTGGAGAAACAATATTTGGTACAGAAGTATTTTAAGTCTCTAGTaaagaccaaaaaaataaaataaaacaaggataGGGATCATTAAAATGAGTCTGTCTTCTGTACAGTAACCAATGTCTGctgaaaagtacaataaaaatcaCAGATTGTGGAGCTCTTTATTAGGTATCATTTCTAGTGCAGCCTTTCCCAATCTATGGAAATACTACAACAACTACAATCatagcaataaaacaaagaataaaatgcCTACCCCTTTTCACCACTTTTTATCACTGATGGGTCAGTTAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30830 lncRNA downstream 126866 22131389 ~ 22133981 (-) True G24579
TU30831 lncRNA downstream 126866 22131389 ~ 22133981 (-) False G24579
TU30786 lncRNA downstream 251414 22005734 ~ 22009433 (-) True G24551
TU30743 lncRNA downstream 317176 21942952 ~ 21943671 (-) True G24515
TU30725 lncRNA downstream 453786 21806120 ~ 21807061 (-) True G24503
TU30958 lncRNA upstream 92957 22355450 ~ 22358446 (-) False AMCG00007565
TU30974 lncRNA upstream 169574 22432067 ~ 22432313 (-) True G24687
TU30996 lncRNA upstream 183877 22446370 ~ 22448954 (-) True G24705
TU31016 lncRNA upstream 255929 22518422 ~ 22521084 (-) True G24721
TU31045 lncRNA upstream 301598 22564091 ~ 22576454 (-) False AMCG00007572
AMCG00007552 mRNA downstream 79726 22177466 ~ 22181121 (-) True AMCG00007552
AMCG00007550 mRNA downstream 107347 22144749 ~ 22153500 (-) True AMCG00007550
AMCG00007551 mRNA downstream 142745 22069642 ~ 22118102 (-) True AMCG00007551
AMCG00007543 mRNA downstream 192154 22049753 ~ 22068693 (-) True AMCG00007543
AMCG00007542 mRNA downstream 212482 22042455 ~ 22048365 (-) True AMCG00007542
AMCG00007558 mRNA upstream 13618 22276111 ~ 22288236 (-) True AMCG00007558
AMCG00007566 mRNA upstream 69573 22332066 ~ 22337074 (-) True AMCG00007566
AMCG00007565 mRNA upstream 78106 22340599 ~ 22357410 (-) True AMCG00007565
AMCG00007564 mRNA upstream 186792 22449285 ~ 22470431 (-) True AMCG00007564
AMCG00007571 mRNA upstream 212917 22475410 ~ 22487415 (-) True AMCG00007571
TU30382 other downstream 1788143 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 1929036 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 2337694 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 3483209 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 4201898 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 1709178 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 2003331 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 3001839 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 3368302 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 12606942 34869435 ~ 34869807 (-) True G26961

Expression Profile