RNA id: TU30985


Basic Information

Item Value
RNA id TU30985
length 1496
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G24695
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22455266 ~ 22456761 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATCTGTTCTGTAATGCTTCAATACAAAGCAACTGTGGTTGGATGGGTCCTGTTGGCATATCACTGACTACAGAGCTGCCCATGTTCAGTCTCACTTACCTGTCATGTACACAGCTTTCTCACTGGCTGGACTGATTCCAGTGGTGTTCAGTGCAGTGACCCAGAACTCATACTGTGTATTTGGCACCAGATCAGTCACAGTACAGTATGTTTCTTTCACCTTTAACATAGATGCTGCAAAACAAAGATTCAAGTTTTACAATACATGCCTGTGTGACACAAATTCTCTGTATATTGATGCATATTCTTCCCTGCTTAGGAGCTAAGTGAAGGGGTTCTAGTGGCCTCAAACCTAGTCACAATGACTGCAGCTGGTAATAGGAAAAAACTTCATAGGTTTGTCTCCAAATCTGCAAAGAATGTAGCATCTACCCCAACCCCAGCCCCAGCTCTCTATAGAAAATGAGGCTAATTATCAGCCTCACCATGTGCACAGCATCGCTCTGTCCTAAAACTTGGTCATTTTCCTGCCAATACTGGTTCAGATCAGGAGATTTAATTTGCTTGTGGCCCATATTTTGTATGCATAGCTGTCACTGAGGCTGGGGCTGTGGGACTGTAATAGCTGTGAGAGATGAAGTGCCAGTTATACAGGTGTGCACAGGAGAAATCTCTGTCAATTATTTCCAGCACTGTGTATTGTGCATTTCTTGCTGGGAGAATTGCCAGTGTAGaaattatctgaaaaaataaatccatgtaTAGCAGTTGCAGCAACAAGCGACTTCACTCCAAAATGGATTTTTCAAATTCTTCCTCCTAGTGAGTGAAGTAATGACCTGAACAGAACTAAGATCAGTGATGTGCTAAAGGACTTCTCTCTGGAAGTAAACCTCACAACTGAAGCACATGcaggtatgtttttgtttctattaacattaatttgtattctgaatATCATTTAGGGAACTGCTAGCTTGACGTGAATTCCATAAACCTTTGTgaaggaaagttttttttttttttttttttttaatgaacaaacaGTAAGCCAAGTGTCTTAACACTTTTGGCTGATATACAGGGAGATAATCATGGAAACCTCCCAAGCTGCAGGAATTGGCTTGCGTGCTATCATTGTAATATGTCTGACAAATGAGAAAATTAATGTGTAAaggagttatttatttattagttggAGCAGCGCTGTGGTGTAACCGTCTTGTTCTTTGGCCTCTTCTGCAGTGGTGTTTTCCAGCACGGGTTTGTAGAAGAGCTCATAGTATTCCACCGTGTCGTCTGAAAACAGGCTCCAGCAGACTCGcactgaggtgctggtggcagAGTTAGGGGTCTGAGGGTTTATAACGGGAGCAGAGGGAGCTGCAcatgaaattacacatttagTATGACTCACAAATGGTGGATTTCCTGCAATGAAAATAACTGCTTTACTGTCACCATTAaaaaaatttaagaaaaatgctAGAACTGGA

Function

GO: NA

KEGG:

id description
ko05410 Hypertrophic cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30983 lncRNA upstream 1211 22453816 ~ 22454055 (+) True G24693
TU30982 lncRNA upstream 4862 22450107 ~ 22450404 (+) True G24692
TU30934 lncRNA upstream 111650 22340736 ~ 22343616 (+) False G24654
TU30935 lncRNA upstream 112703 22340736 ~ 22342563 (+) True G24654
TU30862 lncRNA upstream 188857 22263841 ~ 22266409 (+) False AMCG00007553
TU30988 lncRNA downstream 2259 22459020 ~ 22459517 (+) True G24698
TU30989 lncRNA downstream 3123 22459884 ~ 22460313 (+) True G24699
TU30990 lncRNA downstream 3708 22460469 ~ 22461463 (+) True G24700
TU30991 lncRNA downstream 5363 22462124 ~ 22462552 (+) True G24701
TU31039 lncRNA downstream 124708 22581469 ~ 22583154 (+) True G24742
AMCG00007563 mRNA upstream 6312 22441995 ~ 22448954 (+) True AMCG00007563
AMCG00007562 mRNA upstream 23421 22408928 ~ 22431845 (+) True AMCG00007562
AMCG00007561 mRNA upstream 91072 22353612 ~ 22364194 (+) True AMCG00007561
AMCG00007559 mRNA upstream 123801 22322724 ~ 22331465 (+) True AMCG00007559
AMCG00007560 mRNA upstream 148007 22296054 ~ 22307259 (+) True AMCG00007560
AMCG00007569 mRNA downstream 6345 22463106 ~ 22474401 (+) True AMCG00007569
AMCG00007567 mRNA downstream 61735 22518496 ~ 22520287 (+) True AMCG00007567
AMCG00007570 mRNA downstream 80124 22536885 ~ 22549409 (+) True AMCG00007570
AMCG00007568 mRNA downstream 95929 22552690 ~ 22560767 (+) True AMCG00007568
AMCG00007575 mRNA downstream 220285 22677046 ~ 22685708 (+) True AMCG00007575
TU30868 other upstream 172308 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 1388483 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 3399133 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 3884802 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 4162928 18290108 ~ 18292338 (+) True G23724
TU31151 other downstream 732699 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 1735460 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 5627061 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 5996248 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 6546334 29003095 ~ 29003773 (+) True AMCG00007769

Expression Profile