RNA id: TU30989


Basic Information

Item Value
RNA id TU30989
length 430
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G24699
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22459884 ~ 22460313 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gggATCTTACTTCAACAGTGATGAAGATCTCTTCTAAATGGCTGGCAAAATTCTCCATCTGTGCGATCTGTTCTTCCAGTTTGCACATGGTTTTATGAGTCTcatcctaaaaaaaaacaatttaattagatATGAATATATTCTATACCAGTATTTGGTATGTAGCCATATCTAATTCCTCCCAAAACTAACATATATGGCAATCAACATTGATACTGTACAATGCTCCAGCTATGCAGATGTCcatgttttggttttgggtGGCAAGAACAGAGATGTAGATTTACAGCAAGAGTTCTCAGGAATTAGGTGTCTATCAATATATGTATCTGTTTGGGTTTGAATGTAAGGGAAAGTGCATTATATCATACTAAGGATGAAACTGGGTATGAATGTCTTCATCACATCTGTTGAAAGATGATAATTTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30988 lncRNA upstream 367 22459020 ~ 22459517 (+) True G24698
TU30985 lncRNA upstream 3123 22455266 ~ 22456761 (+) True G24695
TU30983 lncRNA upstream 5829 22453816 ~ 22454055 (+) True G24693
TU30982 lncRNA upstream 9480 22450107 ~ 22450404 (+) True G24692
TU30934 lncRNA upstream 116268 22340736 ~ 22343616 (+) False G24654
TU30990 lncRNA downstream 156 22460469 ~ 22461463 (+) True G24700
TU30991 lncRNA downstream 1811 22462124 ~ 22462552 (+) True G24701
TU31039 lncRNA downstream 121156 22581469 ~ 22583154 (+) True G24742
TU31113 lncRNA downstream 493296 22953609 ~ 22954842 (+) True G24793
TU31123 lncRNA downstream 673505 23133818 ~ 23139437 (+) False AMCG00007585
AMCG00007563 mRNA upstream 10930 22441995 ~ 22448954 (+) True AMCG00007563
AMCG00007562 mRNA upstream 28039 22408928 ~ 22431845 (+) True AMCG00007562
AMCG00007561 mRNA upstream 95690 22353612 ~ 22364194 (+) True AMCG00007561
AMCG00007559 mRNA upstream 128419 22322724 ~ 22331465 (+) True AMCG00007559
AMCG00007560 mRNA upstream 152625 22296054 ~ 22307259 (+) True AMCG00007560
AMCG00007569 mRNA downstream 2793 22463106 ~ 22474401 (+) True AMCG00007569
AMCG00007567 mRNA downstream 58183 22518496 ~ 22520287 (+) True AMCG00007567
AMCG00007570 mRNA downstream 76572 22536885 ~ 22549409 (+) True AMCG00007570
AMCG00007568 mRNA downstream 92377 22552690 ~ 22560767 (+) True AMCG00007568
AMCG00007575 mRNA downstream 216733 22677046 ~ 22685708 (+) True AMCG00007575
TU30868 other upstream 176926 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 1393101 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 3403751 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 3889420 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 4167546 18290108 ~ 18292338 (+) True G23724
TU31151 other downstream 729147 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 1731908 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 5623509 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 5992696 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 6542782 29003095 ~ 29003773 (+) True AMCG00007769

Expression Profile