RNA id: TU30991


Basic Information

Item Value
RNA id TU30991
length 429
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G24701
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22462124 ~ 22462552 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aatacatcacattagcacagaaacaattatttttcacataaaCGTCTTACAAATATGATTCACTTTAATTTCAAACTTGCAACGActggcatttgtttgtttggtttggttaaGGTATGCAAAAGTTACTTTACCTTAACGTGGGTAATCCAGGATTTCGCTTGTTTATATGGCAATTCGTTGAATTATTTCAGTCTGCTGCGGTGAAAGGCGTTTTGGAGTAAATTTAGCCGCAGAGCTCGGCCTCTGGGAATGCTGATGCACCAGCACTAAATGGCAGCTGGTGACAAATATAGAGGGACACCACTGAGTGCCATCAGCCAAACCCCGTCCCAGAAACAGTCTCACATGTCGCTGATGATCACTTCACATAGTTACACGGTCACCAATCGCCAGTGCAAAAtgactggaaaacaaatcactttgcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30990 lncRNA upstream 661 22460469 ~ 22461463 (+) True G24700
TU30989 lncRNA upstream 1811 22459884 ~ 22460313 (+) True G24699
TU30988 lncRNA upstream 2607 22459020 ~ 22459517 (+) True G24698
TU30985 lncRNA upstream 5363 22455266 ~ 22456761 (+) True G24695
TU30983 lncRNA upstream 8069 22453816 ~ 22454055 (+) True G24693
TU31039 lncRNA downstream 118917 22581469 ~ 22583154 (+) True G24742
TU31113 lncRNA downstream 491057 22953609 ~ 22954842 (+) True G24793
TU31123 lncRNA downstream 671266 23133818 ~ 23139437 (+) False AMCG00007585
TU31193 lncRNA downstream 820136 23282688 ~ 23285015 (+) True G24856
TU31242 lncRNA downstream 943407 23405959 ~ 23406837 (+) True G24897
AMCG00007563 mRNA upstream 13170 22441995 ~ 22448954 (+) True AMCG00007563
AMCG00007562 mRNA upstream 30279 22408928 ~ 22431845 (+) True AMCG00007562
AMCG00007561 mRNA upstream 97930 22353612 ~ 22364194 (+) True AMCG00007561
AMCG00007559 mRNA upstream 130659 22322724 ~ 22331465 (+) True AMCG00007559
AMCG00007560 mRNA upstream 154865 22296054 ~ 22307259 (+) True AMCG00007560
AMCG00007569 mRNA downstream 554 22463106 ~ 22474401 (+) True AMCG00007569
AMCG00007567 mRNA downstream 55944 22518496 ~ 22520287 (+) True AMCG00007567
AMCG00007570 mRNA downstream 74333 22536885 ~ 22549409 (+) True AMCG00007570
AMCG00007568 mRNA downstream 90138 22552690 ~ 22560767 (+) True AMCG00007568
AMCG00007575 mRNA downstream 214494 22677046 ~ 22685708 (+) True AMCG00007575
TU30868 other upstream 179166 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 1395341 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 3405991 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 3891660 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 4169786 18290108 ~ 18292338 (+) True G23724
TU31151 other downstream 726908 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 1729669 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 5621270 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 5990457 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 6540543 29003095 ~ 29003773 (+) True AMCG00007769

Expression Profile