RNA id: TU31117


Basic Information

Item Value
RNA id TU31117
length 760
lncRNA type inter_gene
GC content 0.25
exon number 1
gene id G24797
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22954085 ~ 22954844 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttatttcatgtaccatttttattgtatttatatagaaatacttaaaaaaacatgaagtaGCACCATTACTTAAGTTTTACCTTTATTATGTAGAACtttaaatgtcagaaaaataaaactcttgATACAATTTCAAATCTTGTTTCAGCAAatataatattagtatttgACCATGAGGTTAAAGGCCctttatcataaaataaaatatactttgtttttaaactttgctCAATAAAGTACATTTACGCTCAAGTAACTTCAcctacatatacataaacaagtggtaaacaaatgtattaaaatagaaatactAAAACTATAGTGGTGCAACAGAACTCTGTAATTTCCACTGGAATCTAATTTATACAAATTTTAGAAAGCATAAACtgttcctttttgttttacttaccaagttttatacattttcatttttgtaataatatagaataaaatatgatttatatcactgaataaaaaatatgctGGGTGAAGCAGATTTAAAAGACATTTTTTGCTGAACCTATAAAACCTCCATCCCAACAGAATACTGTTTAATGCAATACACATATTGTGGTTTGTATTTCCATCCACATTTGtgtgatattaaaataatacagtgttCTTTGCCCTAAGGCcatactaaaaaataaaaaaagatttaaccCAGCTACAAAAAGTTCACtgaacttaaattaaaatacttgtaaACATCTTTGCAATAAGAAATATAATCTTTCAAGtcaaaaaagaataaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31045 lncRNA downstream 377631 22564091 ~ 22576454 (-) False AMCG00007572
TU31016 lncRNA downstream 433001 22518422 ~ 22521084 (-) True G24721
TU30996 lncRNA downstream 505131 22446370 ~ 22448954 (-) True G24705
TU30974 lncRNA downstream 521772 22432067 ~ 22432313 (-) True G24687
TU30958 lncRNA downstream 595639 22355450 ~ 22358446 (-) False AMCG00007565
TU31120 lncRNA upstream 91269 23046113 ~ 23046373 (-) True G24800
TU31138 lncRNA upstream 178947 23133791 ~ 23134802 (-) True G24816
TU31252 lncRNA upstream 452108 23406952 ~ 23420303 (-) True AMCG00007594
TU31257 lncRNA upstream 468769 23423613 ~ 23437517 (-) True G24905
TU31295 lncRNA upstream 708048 23662892 ~ 23663540 (-) True G24942
AMCG00007584 mRNA downstream 97324 22852895 ~ 22856761 (-) True AMCG00007584
AMCG00007578 mRNA downstream 246390 22697429 ~ 22707695 (-) True AMCG00007578
AMCG00007579 mRNA downstream 266650 22686236 ~ 22687435 (-) True AMCG00007579
AMCG00007576 mRNA downstream 335977 22583729 ~ 22618108 (-) True AMCG00007576
AMCG00007572 mRNA downstream 377636 22561496 ~ 22576449 (-) True AMCG00007572
AMCG00007587 mRNA upstream 184678 23139522 ~ 23166677 (-) True AMCG00007587
AMCG00007588 mRNA upstream 214524 23169368 ~ 23173117 (-) True AMCG00007588
AMCG00007592 mRNA upstream 235339 23190183 ~ 23191247 (-) True AMCG00007592
AMCG00007590 mRNA upstream 252458 23207302 ~ 23268900 (-) True AMCG00007590
AMCG00007591 mRNA upstream 315074 23269918 ~ 23278330 (-) True AMCG00007591
TU30382 other downstream 2481381 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 2622274 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 3030932 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 4176447 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 4895136 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 1016827 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 1310980 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 2309488 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 2675951 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 11914591 34869435 ~ 34869807 (-) True G26961

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00067291 True 3216 mRNA 0.48 2 NC_007118.7 12061787 ~ 12065668 (-)