RNA id: TU31151


Basic Information

Item Value
RNA id TU31151
length 2572
RNA type TUCP
GC content 0.46
exon number 2
gene id G24824
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23189460 ~ 23193521 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTCGGCTGTAATTCCAAAAAGGGAAAAGGTACTCCATATCATCATCTGggtattttgtgaaatgtgctgtatgcattaaacaaataaataagttatcCTCTGCAGACTAATAAGCACAGACTAAACTGACAGCAAAAAGTATgagaaacaacattttaatagttgAAATAAATACTCCAGTACATGCAtgatcaaaacacaataaaaatactAGTAAGTCTGGTAAATAGTGTAAAATCTCTAGTACACACTCACAGCAGCTTTTACCCTTTCacacatggaaaacaaacataacTGCCACTCTTCCCACTTTTACACAGCTGATTTTCTTCTATAGAACAAGATTTCATAGGTCAAAACAAGTGAAGCTACATCCATCAtttcatatgttgttttcaaatgtctGAAAACTGAGGTAAACTTTATAAAATTCATTATTTACTTACAAAGATGGGGCTAATGGTGAAAGTTAAAagcaatttagtttttcattttcttttcttttttgtggaaGTAAAGAGGCTTCAATCACATCCAGCGCGACAAAAAGCACTCATCTTATCATTTCAAATTATGTAGTAAACTCAGACCAGCTCCCATCACCAATAGCCTTCCACATTGCTTTTGCATTCTCTTATATGGTTAAAAAGGGTAAATCCAATAAAACTCTTTGGTATATAAAATTGTGATTAGGAGGTTAcgtttaattattgtaaaaggTTTTAATTCACAGAATGGGAGTTAACTGGCGGTAAAGTCCTGGGTGAAGATCTTTCCCTCAGTGCCTGAGACAGCAAGTTGCATCCATCAGAGACAGCACAGGCCGAGTTCCGTAATCGCTCCCTGTAGTCAGGCATCTTGGTGCTATTTTCTGGATGTTGGGCTATATCCCTGAGGCCTTGAGTCAGGAGAACACAAGCTGAAACGACACTCATTGCCCCACCAAGAACAGCAGTTTGCACTGCCTTCCCGTCAGGATTGATGGTGGCAGCTTTGCCCAAAAACTGAGGCTCAGTAGCAAAGCCCACCAAGGCATGTACAGACTGCACTAGAGGTCCGCTGAATAGCACACACCTGTTCCTTGTCAGTTCACTAGGAGAGGTTTTCACCTCCTTCACACAGGCCAAGAGGGCAGTTGCACTAGTACTCATGCACTTCACGCTAAGTTTGAACTGCTCCTTGCCAAACTTGTCCTTGGATTTATCACTGGCCAGTATGCATGCATCCGTCAGGGTCTTCAGGTTTTTGGAGATGTTCTGGGACACCTCGAGAAGGAGCTGGGGGGTCAGGTCTGCTAAAGGGGTGATTCTCAGAATGCTGCAGCTCTGCTCCACCTCGTGCCGGCACCGGGTCACTTTGTATCGATCCACTAGGCCAGGCAGAGCAGGCTGGGATCCCGGGGTCTCGACAGCAGCCAGATTGTCATTTAAGAGACCTGCTTGCACAAGAGCAGCAGGGTGTCTTTGCACCGTGCAGAAGGATCTGATCGAGCCCAGTCTGGCCGCCCTACAGTGCCTGGGAGGCGCCTGCATGCCTCGGACAATGCGACCACCACCAGAGCAGTTCCGACTGACCTCACCGGGATCGCCGGGCTTGTCCTGCACCATCATGCCATTAATCTGCCAAAATAAAAGCCTCCAATAAGAGAGCCAGCGAGCCCACTGCGGCGGTCCCTTTCTCGgcttttaatcttttctttttcatacaaAACCCAGTGATGTAAACTAGTTCTGTCTGCAGGTCCAGTCCCCTATGCATGTCTATTGTCCAAACGCCCTCCTTAGGAAAAAGCGGAGCATGATTTACTCCTCGTCCGGCGTTGGCTTTCGGTTTTGATGTCCATTTCAGAGGCGTCTTCCACTCGAAACATGGCCTGTTCTGGACTCCACCCCGCAACTTTTCCCACTCGTGTTTGACTTGCAAACTCCCTCTCGGAGAACTGGTCGTGATTGGGAATTGGAAGTGGGTTTCCAGGCTCCCGCTACATCTCCTGCACTATCAGGAAGCACAGGAGGGTGTGGCCGCACTTGGGGCTGCTGCTAGATTGTAACCCAGCCAGGCAACTGTAACTCACCCAAATACGGCAACTTTCAGATGGCTTGCAATCCCACTGATCGCGGTGAAATGAACGAATAGCACCATaaacgtgtattttgtttacgtGTGGGCGCAGTTCGCAGTTTGTTGGCCTTGGTGTTTATATTGTCCGCATTTCAAGGCACAGTGATCTCTCTGCCACAAGCCATCCCTTTCCGAGGCCCCGACGTGGGTGCATCCGACTACCGGCGTGGGGACAAAGTTACAGTCTTCCTCCTAATGAAGTCGCCTTCCCCAGCAGGACCGATCGCCCCGCTTCCATCCTCTTTACTGGCTCTTCTGATCCcttttggcttttttttaaatcgacAAGTTACCTATGAATCATGCCGCTGACgtttaaaaaaagcactttcTGCACATACTGTCACTGAAACACAGCTTTGCGATCTTAGTAAGCAGTGCCTTTGCTGTAACCCcagttaaaccaaaaaaaaagatgttgttGTGCGTTGACGCCTtagtccaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31123 lncRNA upstream 50023 23133818 ~ 23139437 (+) False AMCG00007585
TU31113 lncRNA upstream 234618 22953609 ~ 22954842 (+) True G24793
TU31039 lncRNA upstream 606306 22581469 ~ 22583154 (+) True G24742
TU30991 lncRNA upstream 726908 22462124 ~ 22462552 (+) True G24701
TU30990 lncRNA upstream 727997 22460469 ~ 22461463 (+) True G24700
TU31193 lncRNA downstream 89167 23282688 ~ 23285015 (+) True G24856
TU31242 lncRNA downstream 212438 23405959 ~ 23406837 (+) True G24897
TU31243 lncRNA downstream 213463 23406984 ~ 23425440 (+) True G24898
TU31292 lncRNA downstream 464637 23658158 ~ 23659898 (+) False AMCG00007604
TU31291 lncRNA downstream 473842 23667363 ~ 23670067 (+) False AMCG00007604
AMCG00007585 mRNA upstream 49939 23133811 ~ 23139521 (+) True AMCG00007585
AMCG00007586 mRNA upstream 57186 23116851 ~ 23132274 (+) True AMCG00007586
AMCG00007580 mRNA upstream 235942 22950692 ~ 22953518 (+) True AMCG00007580
AMCG00007581 mRNA upstream 268709 22906458 ~ 22920751 (+) True AMCG00007581
AMCG00007583 mRNA upstream 310208 22857515 ~ 22879252 (+) True AMCG00007583
AMCG00007589 mRNA downstream 5631 23199152 ~ 23202769 (+) True AMCG00007589
AMCG00007598 mRNA downstream 194140 23387661 ~ 23387840 (+) True AMCG00007598
AMCG00007593 mRNA downstream 228495 23422016 ~ 23431721 (+) True AMCG00007593
AMCG00007604 mRNA downstream 464329 23657850 ~ 23670079 (+) True AMCG00007604
AMCG00007605 mRNA downstream 499721 23693242 ~ 23708772 (+) True AMCG00007605
TU30868 other upstream 906502 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 2122677 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 4133327 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 4618996 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 4897122 18290108 ~ 18292338 (+) True G23724
TU31514 other downstream 998700 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 4890301 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 5259488 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 5809574 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 6572307 29765828 ~ 29775035 (+) False G26258

Expression Profile