RNA id: TU31242



Basic Information


Item Value
RNA id TU31242
length 879
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G24897
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23405959 ~ 23406837 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTAATAATTGTAAAGGTTAATTCAAAGAATTGTCCTAACAGATATCAAATGAAATCCACACATTTGAAAATTGTAACACGTTATGTACAATACCgcttttcattgttttagaGATTGCgaacaaaaagttatttgcatTCCTCTGCGCACACGAACATCAGTTCAGCCCTGttacaacacaattacaaatcaATTCAAGTTTCATAGTGCATTGTGGAAAGTTATTCTCAAAATCAACCACTAAGTTTTGCCTCCTCTTTACCACACTGCATAAAACTGAAGAAATACATGCTTGCGAGAAGTGCTGGGTTTCCTGGAATAAATTCTaccaatacatacaaacatggATTAATAATCTGGTCACTTTACATTAGGTTTGGCCTGgttataattttatttccaattcCATCTAAGGTTACCAACTCTCAATAGATGTTGTCTAGGAGGATTGTTCACCAAATGACTACAAGGACTGACCCACTAGCAATGTAAAACTTCCAGGGGGGGGGCTATGAAATCCATTGTAGATTAGAATCAAGGTAAAAGCTAGTGTTAGTCAGTGTTTGTGGTTAGTCCATGGGTTGAAGTACAAGAAAAATGAGAATGCACCCTTGTTATAGTGATGGATTTTGCTAATGGTGGGATGGTATCATGGTTACAATAAGGGATTCAGAAACCCAATTGATAAAGACAAGCAATGGCCAGAACCCCCAACCATAGACAACAAGAATATCAAATATCCCTAATATTATTGTAACTATGCTTAAAGGGAGCTTTAATCCCAACTCCAACCCAAgattctgcaaataaataaaatactaaggATTTGGAAATCAATTTGAAGAGTTGTTCGATTAAGTTTAAAATGGAGATCACACT

Function


GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU31193 lncRNA upstream 120944 23282688 ~ 23285015 (+) True G24856
TU31123 lncRNA upstream 266522 23133818 ~ 23139437 (+) False AMCG00007585
TU31113 lncRNA upstream 451117 22953609 ~ 22954842 (+) True G24793
TU31039 lncRNA upstream 822805 22581469 ~ 22583154 (+) True G24742
TU30991 lncRNA upstream 943407 22462124 ~ 22462552 (+) True G24701
TU31243 lncRNA downstream 147 23406984 ~ 23425440 (+) True G24898
TU31292 lncRNA downstream 251321 23658158 ~ 23659898 (+) False AMCG00007604
TU31291 lncRNA downstream 260526 23667363 ~ 23670067 (+) False AMCG00007604
TU31352 lncRNA downstream 438667 23845504 ~ 23851902 (+) True G24992
TU31358 lncRNA downstream 453845 23860682 ~ 23863793 (+) True G24997
AMCG00007598 mRNA upstream 18119 23387661 ~ 23387840 (+) True AMCG00007598
AMCG00007589 mRNA upstream 203190 23199152 ~ 23202769 (+) True AMCG00007589
AMCG00007585 mRNA upstream 266438 23133811 ~ 23139521 (+) True AMCG00007585
AMCG00007586 mRNA upstream 273685 23116851 ~ 23132274 (+) True AMCG00007586
AMCG00007580 mRNA upstream 452441 22950692 ~ 22953518 (+) True AMCG00007580
AMCG00007593 mRNA downstream 15179 23422016 ~ 23431721 (+) True AMCG00007593
AMCG00007604 mRNA downstream 251013 23657850 ~ 23670079 (+) True AMCG00007604
AMCG00007605 mRNA downstream 286405 23693242 ~ 23708772 (+) True AMCG00007605
AMCG00007606 mRNA downstream 306346 23713183 ~ 23759994 (+) True AMCG00007606
AMCG00007612 mRNA downstream 498366 23905203 ~ 23919949 (+) True AMCG00007612
TU31151 other upstream 212438 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 1123001 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 2339176 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 4349826 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 4835495 18567769 ~ 18570464 (+) False AMCG00007433
TU31514 other downstream 785384 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 4676985 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 5046172 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 5596258 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 6358991 29765828 ~ 29775035 (+) False G26258

Expression Profile