RNA id: TU31257


Basic Information

Item Value
RNA id TU31257
length 401
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G24905
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23423613 ~ 23437517 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGACTGAATTCTTCGAACAAAGGCACTCAGGCACAGATTGAAGAATGCTAACAAATCATATGGGAATGAAGTTTCCATATAGACTATAGGAATATCACGTGCAGTGGATGCAATGGAGGAGAGCTGAAATCTCACACCTGCAGACAAGGCCTCTTCGACTTGCTCATCATCTCCTGGCTGGCGGATGTTCCAGGATGTGATCGGCAGGGACTGGATGTCTTTGGCAGCGGTCAGCTTCAACATGTCCATGTGGCTGCTTTTGGACTGGTATTTGGGAATGAAACACTCCTTGCCCTTCCTGAAGATGTCTTCTATGATCTCCTCAGTCTGGACCTCGTCGTGCATGCTCAGGAAAACTGCGATCCTCTCGCAGCTCTGGTATTTAGGATGCTGTatgagct

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31252 lncRNA downstream 3310 23406952 ~ 23420303 (-) True AMCG00007594
TU31138 lncRNA downstream 288811 23133791 ~ 23134802 (-) True G24816
TU31120 lncRNA downstream 377240 23046113 ~ 23046373 (-) True G24800
TU31117 lncRNA downstream 468769 22954085 ~ 22954844 (-) True G24797
TU31045 lncRNA downstream 847159 22564091 ~ 22576454 (-) False AMCG00007572
TU31295 lncRNA upstream 225375 23662892 ~ 23663540 (-) True G24942
TU31296 lncRNA upstream 229857 23667374 ~ 23670082 (-) True G24943
TU31309 lncRNA upstream 271991 23709508 ~ 23710095 (-) True G24953
TU31311 lncRNA upstream 275522 23713039 ~ 23713294 (-) True G24955
TU31375 lncRNA upstream 486722 23924239 ~ 23926237 (-) True G25014
AMCG00007594 mRNA downstream 8599 23406928 ~ 23415014 (-) False AMCG00007594
AMCG00007597 mRNA downstream 17908 23397074 ~ 23405705 (-) True AMCG00007597
AMCG00007596 mRNA downstream 56013 23325562 ~ 23367600 (-) True AMCG00007596
AMCG00007595 mRNA downstream 119497 23284800 ~ 23304116 (-) True AMCG00007595
AMCG00007591 mRNA downstream 145283 23269918 ~ 23278330 (-) True AMCG00007591
AMCG00007599 mRNA upstream 55038 23492555 ~ 23502919 (-) True AMCG00007599
AMCG00007601 mRNA upstream 101412 23538929 ~ 23587177 (-) True AMCG00007601
AMCG00007603 mRNA upstream 165816 23603333 ~ 23621762 (-) True AMCG00007603
AMCG00007602 mRNA upstream 198925 23636442 ~ 23647409 (-) True AMCG00007602
AMCG00007600 mRNA upstream 215016 23652533 ~ 23657431 (-) True AMCG00007600
TU30382 other downstream 2950909 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 3091802 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 3500460 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 4645975 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 5364664 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 534154 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 828307 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 1826815 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 2193278 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 11431918 34869435 ~ 34869807 (-) True G26961

Expression Profile