RNA id: TU31296


Basic Information

Item Value
RNA id TU31296
length 2709
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G24943
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23667374 ~ 23670082 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGTATTAGAACTTCCCTTTTTTATTCACAGATTTGTACAGATACAAATTAGCAGACAGTGTGTTTTCaacatctttctttttgttttaaactgacaTTCAGCACTTGATGGCTTGGAAGACTCTGAAATTACAAGATAAACTATTTTCTGAAGTAGCAGAACTGTGACCTTTCTTACtgacaatttagttttttttttttccaacttttAGTCTTTCAAACTGTTGTTCATGTTATCAAAATTGAGTGAGTATTCCAACAGCTGAAAGGAATGGGCAATTTACAATGCGTATGATACAAAGGTATATGACAGAAGTGCTTCATAGTTTCAATTCATAGCATTTCAATGCTGACGATATCAttagataaaatgtatttctccaatcaaaaatcaaaagaaCAGAAGATGACGATGGTGACCTAATTCCCAGCATTCTCACAATTTCCAGGACACGTGGAGCAAGGAAcaattaaactgcatttgtaCGATTAGAAGAGATAGGAGCAGAGGAGGCAGCTGGATTTCATTACAATTTTCTTGGCTGGTATGGGCCAAAAATACAGGGACAATTTATGCTGTGCTGATCTGAAGAAAAATACTCAGTGTATTTATAAAAGGATTTCcaagtacattttataatttactgGAAGCACTTcatctaaaataacattaaacttcaataacacacaaacacttcacCCTTCTGCATTAGCACACACTGCTGCTAGATTAGGGAACACCAATCCCGGCATGGCTGCTCTCATGTGTCAGATACCTCAGTAACAGGAGCCTcacaatttagaaaataaatctattcgAGTCAGAACTACAATTTATACAAGGctagaaaactgaaaaaagccTTTGATTTTGTCAAGTCTTTAAAGACTTGATAAAGTCTTTAAATAccttatacattttcataattttgttaACTTTGTTAATTACTTTCGCAATTCCCTGTACCCCTTCTgagctttttaaagaaaaataataacataataaaaagcaTCAGTACATTAAAAGGAAAGATTAGTAAATAAACTATTGGGTTTAAATCATGTTTGTTGTTGCCATAAGAACAAAAAACTGCACTAAGTTTTAGTTCctggaaaaacataaaaatcagaTTCCATTCAGGTACTTTTGTCAAGGAAGAGAAAGGATGTCCAAGTACAGTTTTCAGCttcatgtaaataaatgtaacgtTTTTAGTCAAAAAAGTTTTggcaactaaaacaaaatcacaaaactcATAATACGGACATAATAGCAaacttttcaaaagtcaaagtTAAATTAAGCCAAAATAAAAGAtacaattagatttttttttaccactagTGTAGTAGGAAATGCTCAGAGAATGTTACTTTTTGAGTTATAGTTTGGTCTTAACACATAACCTACTTAAGGCATGTCATTTAGATGCAGATATTTTCTAGAACAGGTGCAGTCCCTTTTTGCTCTTCAGATGCAGCAAATACTGTTCTCTCGTAAAACTAAGGCTCCTAAATCCCACCTCACTGTGCCTATTCTGTCTGCAAGCAAAATGAAGAATTCCCATTCACTCGCCCTGGAACACAATAGTTTCTACCACTTCAAAGCCCTCAGCATTGCGCAAACAGACACTAAACAAGCCACATCAGAACAAACACAAGACCTTTCAACATTTTTCCATACACTTTGATAATAGTCAAGATATCgtagtttttaaataatcttaaaaaaatatctgctgtacatttataacacaaatatttacataaattatttgtatttattaatttattttctcgaGCGGCTTTAAACATTTTGTCAATACATGGCGATTGGTTCACTGCAAGATGCTTTCACGATtctacactgaacactgaaatgcatttctctcAGCGTTTTTCCTGTGTACATTTCCCATGTCTTGTTAATGCCAAGATTAAGTCTTTGCATGGCCTTTTTCCTATTATATTTATGGGGCAATAAGCAAAGAGTGTGGGTTTGTTTaaaagaactgaaaacaaaaccactccTTGCCATGGCATTTTTCTCTCCAAGTAACACAAACTTGGTCTCCGACAGTTTCAATAACGTTTCATTTATCAAAaggcaattaaataaattaaatggatcAAACAGCAGTGAAGACTGTACACAGTTGCATTGTATGAGACTTAATACCTTCCCTGGAATAATGGGTTTACTAAACACAGTGACTTGcaagttttaaatttaaatccaCCTTGTGGCAATGTGAAACCATTTTCTGGTTTCTATAATTTCAATTCAGACAAATTCACAGCTCTTCTTAAAGTACCTTAGAAAAGAGGGCATCTACATATGTATTATCTTTTTCAATACCCCAGCACATAAGTATCTGTAcctcatttaaaacatgaacatgttcagctttaacaaaaaaacaatggtaaCATTCTAAACTGATGACCCATTTGATCGCTTAAgtttatcaatacaaaaataatacctCCACTGATATGAATCTTTGAGAACTGCATTACTAGAAATATGCATTGTAACTGAGAAGGATTTTGTCCTAACTAAGCATAAGTATTTAAGGAATACCTTACAATTGTTCTTGTCATGGAGATTAAGGCTCGAAAGAgattcaaatgcaaaacatttcaataatatcAACTGGAACTGTTTAAGTGAAATCCAAATCCACAGAAAAATCGAATCAGAAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31295 lncRNA downstream 3834 23662892 ~ 23663540 (-) True G24942
TU31257 lncRNA downstream 229857 23423613 ~ 23437517 (-) True G24905
TU31252 lncRNA downstream 247071 23406952 ~ 23420303 (-) True AMCG00007594
TU31138 lncRNA downstream 532572 23133791 ~ 23134802 (-) True G24816
TU31120 lncRNA downstream 621001 23046113 ~ 23046373 (-) True G24800
TU31309 lncRNA upstream 39426 23709508 ~ 23710095 (-) True G24953
TU31311 lncRNA upstream 42957 23713039 ~ 23713294 (-) True G24955
TU31375 lncRNA upstream 254157 23924239 ~ 23926237 (-) True G25014
TU31383 lncRNA upstream 284339 23954421 ~ 23955412 (-) True G25019
TU31385 lncRNA upstream 287898 23957980 ~ 23958182 (-) True G25021
AMCG00007600 mRNA downstream 9943 23652533 ~ 23657431 (-) True AMCG00007600
AMCG00007602 mRNA downstream 19965 23636442 ~ 23647409 (-) True AMCG00007602
AMCG00007603 mRNA downstream 45612 23603333 ~ 23621762 (-) True AMCG00007603
AMCG00007601 mRNA downstream 80197 23538929 ~ 23587177 (-) True AMCG00007601
AMCG00007599 mRNA downstream 164455 23492555 ~ 23502919 (-) True AMCG00007599
AMCG00007611 mRNA upstream 102650 23772732 ~ 23781085 (-) True AMCG00007611
AMCG00007607 mRNA upstream 148960 23819042 ~ 23821475 (-) True AMCG00007607
AMCG00007608 mRNA upstream 152409 23822491 ~ 23827715 (-) True AMCG00007608
AMCG00007610 mRNA upstream 161087 23831169 ~ 23834638 (-) True AMCG00007610
AMCG00007609 mRNA upstream 175510 23845592 ~ 23886667 (-) True AMCG00007609
TU30382 other downstream 3194670 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 3335563 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 3744221 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 4889736 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 5608425 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 301589 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 595742 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 1594250 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 1960713 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 11199353 34869435 ~ 34869807 (-) True G26961

Expression Profile