RNA id: TU31311


Basic Information

Item Value
RNA id TU31311
length 256
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G24955
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23713039 ~ 23713294 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTCCGTTTATTTATGAAAGCTGTACTTTAACCGGACATTTTGCTCACCATTCTCCCCATCCATGTTCTCCTCACTGCCAGTGACCTCGCTAGTGCCCACAGACCAGTACATCCTCTGTCGGCGTCACCCACTTGAACAGACAAATTCCTGTGGCTGTTGTTTCAGGATAAATGCATGGCGAAGATGACACGTGGCTGTCCGAAAGTGGCAGGGAATCAGCTTGCCGAAACTAGATGGTGCTGGTTTCCAAATACC

Function

GO: NA

KEGG:

id description
ko00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31309 lncRNA downstream 2944 23709508 ~ 23710095 (-) True G24953
TU31296 lncRNA downstream 42957 23667374 ~ 23670082 (-) True G24943
TU31295 lncRNA downstream 49499 23662892 ~ 23663540 (-) True G24942
TU31257 lncRNA downstream 275522 23423613 ~ 23437517 (-) True G24905
TU31252 lncRNA downstream 292736 23406952 ~ 23420303 (-) True AMCG00007594
TU31375 lncRNA upstream 210945 23924239 ~ 23926237 (-) True G25014
TU31383 lncRNA upstream 241127 23954421 ~ 23955412 (-) True G25019
TU31385 lncRNA upstream 244686 23957980 ~ 23958182 (-) True G25021
TU31388 lncRNA upstream 245182 23958476 ~ 23960843 (-) True G25024
TU31433 lncRNA upstream 317741 24031035 ~ 24031304 (-) True G25058
AMCG00007600 mRNA downstream 55608 23652533 ~ 23657431 (-) True AMCG00007600
AMCG00007602 mRNA downstream 65630 23636442 ~ 23647409 (-) True AMCG00007602
AMCG00007603 mRNA downstream 91277 23603333 ~ 23621762 (-) True AMCG00007603
AMCG00007601 mRNA downstream 125862 23538929 ~ 23587177 (-) True AMCG00007601
AMCG00007599 mRNA downstream 210120 23492555 ~ 23502919 (-) True AMCG00007599
AMCG00007611 mRNA upstream 59438 23772732 ~ 23781085 (-) True AMCG00007611
AMCG00007607 mRNA upstream 105748 23819042 ~ 23821475 (-) True AMCG00007607
AMCG00007608 mRNA upstream 109197 23822491 ~ 23827715 (-) True AMCG00007608
AMCG00007610 mRNA upstream 117875 23831169 ~ 23834638 (-) True AMCG00007610
AMCG00007609 mRNA upstream 132298 23845592 ~ 23886667 (-) True AMCG00007609
TU30382 other downstream 3240335 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 3381228 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 3789886 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 4935401 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 5654090 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 258377 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 552530 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 1551038 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 1917501 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 11156141 34869435 ~ 34869807 (-) True G26961

Expression Profile