RNA id: TU31372


Basic Information

Item Value
RNA id TU31372
length 1306
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G25011
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23921920 ~ 23923225 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tacacaACTATTGTTTACTGCAAATATGCacactgaataattaaaaaaatctgggTTTTCCAGTCTTATTtctattataattttaatatggTATGTTAATATACCAGTGACTTAAATCCATAAGCAAATTACAACTGCATACAAAAATACTTGAAACTAAGGTTTTCCTGTTCAGCATTGAGTCAAACTGACGTGGGGTCCAAACctacaaaacagaaattgaaagTACCATATACAGTGGGCAGTTTGGTCAACCATAAATCTATTGTTACTAATCCATGactgatgcatttattttctttaaatgttactttttgtatatttacaacACAATGTTTTCGTGTGAAACAGAAAAGAGATCAATGgcacttaatatatatatatatattaaataaatgaaaaaggctacatttagaaatatataaacaaaaatccaTCATATTCCAGTTTTAACAAATTTTTAATAATCCAGGTATTGTAAGGAAGAGGTGATGTAAAGAAATATGGGGTGTTTCTACCacattgcttattttaaaaataatatacaatgaCACCCCTCTTCTGGGTTTTGACTGGAAATAATGAATTCAAACAAACTCCTGCAGTCTTTACTTTTATAATGGAAACCAGTCACTGGGTCTGAACATGTTAGTAAAAATACATGttgtaaatacattgtacagACAAGAGGGTTTTAACTATAATAATTACTTTGATATGAGTAAGTGAGTAAGTGAACTTTCATAGCCTTTTTATAGGTCTGTAAGCACTGCTGATGATTTACACTGTACAGGTGTCCACAATATAGCAAGCTTTATAGTTGTACATGTTTTgtatcattcttttttttcttgaactCGTTTGGATAAAGTTTCTATTtgcaaattaacaaattaacatttacaattttagtcatagttatttattttaacaaattgtattaataactattttgaaaaatataacgTAGCAGATAAAAGTTAAATTGATAGATTATgagagattgttttttaataaattgaataatgtagTATCGTAATCATGTGCAGTGTGAATCATTTTCACATCTGTCTTCCTGACTGAAGAGAATTGACTGATTTGGTTTGTTACCTGAACACATTTTGGTTTTAGGACTGGATTTGGGGGGCATAAATGGactgacattttcattaaacCTTGTCTGATGTCTAATTTTATAAGTTATTATCTATCTTGGAAAGAACAAACATTTATGAAATCTGACTTTTTAGTTTATTGAATTTTCAGTtataacatacactcacctaaaggattattaggaacacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31358 lncRNA upstream 58127 23860682 ~ 23863793 (+) True G24997
TU31352 lncRNA upstream 70018 23845504 ~ 23851902 (+) True G24992
TU31291 lncRNA upstream 251853 23667363 ~ 23670067 (+) False AMCG00007604
TU31292 lncRNA upstream 262022 23658158 ~ 23659898 (+) False AMCG00007604
TU31243 lncRNA upstream 496480 23406984 ~ 23425440 (+) True G24898
TU31374 lncRNA downstream 1014 23924239 ~ 23926154 (+) True G25013
TU31428 lncRNA downstream 107809 24031034 ~ 24031304 (+) True G25056
TU31444 lncRNA downstream 121764 24044989 ~ 24046609 (+) True G25069
TU31459 lncRNA downstream 162182 24085407 ~ 24087304 (+) True G25084
TU31480 lncRNA downstream 227118 24150343 ~ 24153848 (+) True G25103
AMCG00007612 mRNA upstream 1971 23905203 ~ 23919949 (+) True AMCG00007612
AMCG00007606 mRNA upstream 161926 23713183 ~ 23759994 (+) True AMCG00007606
AMCG00007605 mRNA upstream 213148 23693242 ~ 23708772 (+) True AMCG00007605
AMCG00007604 mRNA upstream 251841 23657850 ~ 23670079 (+) True AMCG00007604
AMCG00007593 mRNA upstream 490199 23422016 ~ 23431721 (+) True AMCG00007593
AMCG00007614 mRNA downstream 19486 23942711 ~ 23960914 (+) True AMCG00007614
AMCG00007613 mRNA downstream 46616 23969841 ~ 23977600 (+) True AMCG00007613
AMCG00007617 mRNA downstream 56189 23979414 ~ 23985768 (+) True AMCG00007617
AMCG00007616 mRNA downstream 64521 23987746 ~ 23994665 (+) True AMCG00007616
AMCG00007619 mRNA downstream 74212 23997437 ~ 24007310 (+) True AMCG00007619
TU31151 other upstream 728399 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 1638962 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 2855137 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 4865787 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 5351456 18567769 ~ 18570464 (+) False AMCG00007433
TU31514 other downstream 268996 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 4160597 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 4529784 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 5079870 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 5842603 29765828 ~ 29775035 (+) False G26258

Expression Profile