RNA id: TU31374


Basic Information

Item Value
RNA id TU31374
length 1916
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G25013
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23924239 ~ 23926154 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cacagtattagtatggtgttcctaataatcctttaggtgagtgtatataactaAGCCATTGTGTAATGTGATTGATAAATTGAATACTGTTGGAAGCAGGACATACAGTTGATTTGCATAGGCTTGGGACATTATACACTTAACTGGAGTATGCATTAATCAGGAGAAAGttatgtaatacaaatacaacagtCTATGTGCACACGTACTTGCATATATGACTCGTCTAAATCAGATTCATCACGAGTACAGAGCATAGTGGGCTTCAgctattagtattattagtatttataaaattataaatcagcGACTGATGCCCTTTTGTTTACAGTAGCAGAAGCACAAAAATAGTCAGAAAGCAGTAGGAAAATATTTTACTGCAGGTAAAGCAATAAAGTCTGAACTTTCCTGTAGTGGGCAGCAACTATGCAATTATCATGTATAAAATAATCAggtataaaatacaataaaacagaatatgCAACTTTACTAGTTTCTGTGGGTATCTgcgtttatttatatttttgtattttcactgcATGTCATCTAATCTTCCAAGAATGAGACACCTTAGTCTCATCCCACAGAAACAGTTGGTACAAAAACAATTCCTTTGCCCAGTTTTTGGTGCATTCCAATAACATCCAGCACAGTTGCTAAGGAGAGCTTAATGAGCGTAACTGAAATTAAGTTGTCAAGTACATGACTGTATGAAATGCCTGAGACTTTCTGTCCTCACAGGACAAGCACCTGAGAGCCATGGAGCTCCTATAGGAATGCCCCGGTAAAACTACTGTTTTTGCATGTCATACCTCAAGGGGCCTGACGTTTACCTGGCCACTTCAGGTCACTGCCTACTGCAGCGCTGATGTTGCAGTACATGTTCTGGAGTGCTCGGGACTTTTCTAGTCAAAGGCACCTTACAAAAGAGCAGCTAAAAACTATGAGTGTTCCAGAAGTACCCCTTCACTCAGTCCATAAATGCAACTTTagtcaatatttgtttatataaaatcagCCTTCAGGGCTCTTGTTGTCTTTCAGTAAGGCCAAAGAGGAAGTATTTTATCATGTGCATCACTTTTTGAAAAAGCTTGTGTATATTTTCAGCTGGAGACTGTAAAGTATGTTTTACCTCAGAGCCTTCAgaactgtattaataaaatatgaaatctgcTTGGGCTACCAGAACTAGGGATTCCAGCTGTGTCTGGCTTCAAAACAGAAAGGAAGGTTTAAACAGCATCATCTATGACTGGTGCTGTACGGAAAACTGACCTTTTACTTTTACGTTCCCCTTTAACACAGAAAGTGCTTCTGTTCTTGTTTTGGACCAACTACAGAGAATTGTGAAATGGAGTTGTTTATtgtacaacaaatatatattttagagtCTCCTTTTCATTccattaaagtatatttttaatcttaaaaattAAACGTGTTTCTAGAAGAACCGCTGAGTGTTATGTGGGAATTATAGGTCTTTAAGGAAACATACTAAATGATTCTATCCATGTAAAACCCTATGAGCACATACACATCAGAGTATGATTGCCAACGTGCGTCATTCCATTTCTTGTAGATCTTTTCTTCTCCACCCAGAACTATATTTTTAACCCTTAAAACATAAGCATATATGTCAGTGTCATGCAATAACTTTAGAATattcatgatttatatttacCTGTGTAAATTATACAGTTGTtcttaaagttgttttttatttagaaacTACAGTCTTGAGTTACCAGCTTGTGTGTATTACAATGGATTTAAACCTTAGTTCATAGATTCAGGAGAGCAGAATGGTTCTGTTTAGCAttgaaattagattttaaattcataaaaaaattatttatatatagagagatcaATTCACTTTTattctgtaatatattataatgtaaaaagCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31372 lncRNA upstream 1014 23921920 ~ 23923225 (+) True G25011
TU31358 lncRNA upstream 60446 23860682 ~ 23863793 (+) True G24997
TU31352 lncRNA upstream 72337 23845504 ~ 23851902 (+) True G24992
TU31291 lncRNA upstream 254172 23667363 ~ 23670067 (+) False AMCG00007604
TU31292 lncRNA upstream 264341 23658158 ~ 23659898 (+) False AMCG00007604
TU31428 lncRNA downstream 104880 24031034 ~ 24031304 (+) True G25056
TU31444 lncRNA downstream 118835 24044989 ~ 24046609 (+) True G25069
TU31459 lncRNA downstream 159253 24085407 ~ 24087304 (+) True G25084
TU31480 lncRNA downstream 224189 24150343 ~ 24153848 (+) True G25103
TU31520 lncRNA downstream 285528 24211682 ~ 24213444 (+) True G25134
AMCG00007612 mRNA upstream 4290 23905203 ~ 23919949 (+) True AMCG00007612
AMCG00007606 mRNA upstream 164245 23713183 ~ 23759994 (+) True AMCG00007606
AMCG00007605 mRNA upstream 215467 23693242 ~ 23708772 (+) True AMCG00007605
AMCG00007604 mRNA upstream 254160 23657850 ~ 23670079 (+) True AMCG00007604
AMCG00007593 mRNA upstream 492518 23422016 ~ 23431721 (+) True AMCG00007593
AMCG00007614 mRNA downstream 16557 23942711 ~ 23960914 (+) True AMCG00007614
AMCG00007613 mRNA downstream 43687 23969841 ~ 23977600 (+) True AMCG00007613
AMCG00007617 mRNA downstream 53260 23979414 ~ 23985768 (+) True AMCG00007617
AMCG00007616 mRNA downstream 61592 23987746 ~ 23994665 (+) True AMCG00007616
AMCG00007619 mRNA downstream 71283 23997437 ~ 24007310 (+) True AMCG00007619
TU31151 other upstream 730718 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 1641281 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 2857456 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 4868106 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 5353775 18567769 ~ 18570464 (+) False AMCG00007433
TU31514 other downstream 266067 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 4157668 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 4526855 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 5076941 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 5839674 29765828 ~ 29775035 (+) False G26258

Expression Profile