RNA id: TU31444



Basic Information


Item Value
RNA id TU31444
length 805
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G25069
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24044989 ~ 24046609 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AAACAGTCTCCACTTAGTGCTGCTGCATAATCACTCCACCCTCCtagatatatatttgtttctcacTTCTGCAGTCAGTGCTTCCTGTTGTAGAAGTCAAATTTGGCCAACAATGTTCAGAAGTCCTATGTTCGGCAGCTCTGCCAAGAATAAGTGACATGGATATAAACATGAAGGTTCTTTGCCTCGGCTGCTTTGCTGTGCTCATTGTTGGAGTTGGAGgcTTCCTTGAAGaagacaatgtattttatattgaagcCCTTGGATTTAGGATTCCAGGTCCATGTTTCTGGTACAGTCTGTTTGGTGTCTCTGTCTTCAATGGCTTCTGCCTCCTACTCATCATCTGTATTTATGGGGAGATCAAGAGAGGAACCAAACGACTACACCGCACAATGTACATCAGCAGACAGTAATCTCCCCACTCTGCAGCCTGGGAGAGGGCCACCACAGCCGGGAAAAGGAGAAGGggcatgtgtctgtgtctgtgtctgtggaggggaggggggtatcTTCAACAGAAGTCTGTGCAGaagtaaaatatgattttatggTAACTCTATAGAATCTTATAGAGTCAAAATGTGTGTTACCAACATCTTGTTAGGCCTACTTATAGTTTCTCaatccaaacacacaaactataGGCTACAGTGTAGGTAGGCTATTTAGAATAAGGTTTCCAAATCCAAGTTAAATATCTACACCActatttcttgttcttcttcatatcttgaaatgtttaaatatacaaaatctttatacatacattttttttaaaatcaataaatgcatttatataaaa

Function


GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production
ko05310 Asthma

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU31428 lncRNA upstream 13685 24031034 ~ 24031304 (+) True G25056
TU31374 lncRNA upstream 118835 23924239 ~ 23926154 (+) True G25013
TU31372 lncRNA upstream 121764 23921920 ~ 23923225 (+) True G25011
TU31358 lncRNA upstream 181196 23860682 ~ 23863793 (+) True G24997
TU31352 lncRNA upstream 193087 23845504 ~ 23851902 (+) True G24992
TU31459 lncRNA downstream 38798 24085407 ~ 24087304 (+) True G25084
TU31480 lncRNA downstream 103734 24150343 ~ 24153848 (+) True G25103
TU31520 lncRNA downstream 165073 24211682 ~ 24213444 (+) True G25134
TU31525 lncRNA downstream 182027 24228636 ~ 24228910 (+) True G25138
TU31536 lncRNA downstream 208181 24254790 ~ 24255913 (+) True G25148
AMCG00007620 mRNA upstream 588 24041906 ~ 24044401 (+) True AMCG00007620
AMCG00007621 mRNA upstream 28376 24013330 ~ 24016613 (+) True AMCG00007621
AMCG00007619 mRNA upstream 37679 23997437 ~ 24007310 (+) True AMCG00007619
AMCG00007616 mRNA upstream 50324 23987746 ~ 23994665 (+) True AMCG00007616
AMCG00007617 mRNA upstream 59221 23979414 ~ 23985768 (+) True AMCG00007617
AMCG00007618 mRNA downstream 1625 24048234 ~ 24051827 (+) True AMCG00007618
AMCG00007622 mRNA downstream 9587 24056196 ~ 24077348 (+) True AMCG00007622
AMCG00007631 mRNA downstream 145683 24192292 ~ 24194481 (+) False AMCG00007631
AMCG00007633 mRNA downstream 182913 24229522 ~ 24230585 (+) True AMCG00007633
AMCG00007632 mRNA downstream 209537 24256146 ~ 24261899 (+) True AMCG00007632
TU31151 other upstream 851468 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 1762031 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 2978206 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 4988856 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 5474525 18567769 ~ 18570464 (+) False AMCG00007433
TU31514 other downstream 145612 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 4037213 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 4406400 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 4956486 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 5719219 29765828 ~ 29775035 (+) False G26258

Expression Profile