RNA id: TU31480



Basic Information


Item Value
RNA id TU31480
length 1097
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G25103
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24150343 ~ 24153848 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTCttttccagatattttatttggtACTGTtaaaagtttcatttttataCTGAAGGCACGCCAGGTAATGTGAAAACAGTGCAAAAGAACAAACGTATTTCTTAAGAATATAACTACATCCTATGGAGTGATACAAGGGAGACTTTTCCAGAACGCCTCAGGACTGCGGTACACTGGTCCGTCAGCTCATTGTGAACACCTTTGACAGAAAAATCAGATTACTGCCTGGAAGCCCAGCGAACCCAAACAACTGCAACACCTTGCAAACTTCACGTAGGGTGACACCTTGTGGCCTATAGTTGCAACTGCAGTCATTCTTGCTATAATACTGTACACGTATTGAAGTTTATGAATGGTTCTCAGCAAAATGGGTTGAACAGGAAAGATAAACAGTTTCTGCTTTGCAACAGTGATACAGTAATCCAGGCAATAATGTGGCATCAGTGAGGGGGCGGTAGTGTGAGCTGTGCACAATTTTTGTACAACTCAAGTCCCATTAGTTTAAACCCTTCTCAGCTATGAGGAGGACAGAGGAAACTGGTTTCCACTAAGTGGTAAGAATCCCACTCCCCTTTAAGTCATACATAGAAGTGTGgatgtttgcaaaaaaaaaaaaattaaatgttttaaattaagacagtactttatttatttgaagaaaacaagaaaggaCATGTAATCGCTCTGTACAGCACTGAACCGGCCAGCTCTGCCTTGATGCCTCTCTCAAAGACATGGAATGGACCAGCTGGATCAGCCCGTCAGTCCCCTGCACTGGATGGGGGCGATTTCCTATTCTAAAGAatctggtggggggggggggaatttcAGGGTATATAACCATTTGCATATTATCAAACAATGTTACACTAGATTTCAGAATTAATGATCCATCTCCTGAGCACACGAGATTAAACTTCTGTCCAGCTCTCTGGGTGTTCGTCCAGattcataaattcataaatataaaaggCCTGCAAAATGAACAGTTAAGAGTGTTTCTTAAAatagtttctttttcttttccaactCACACAATGTGgtgtcattttatatataatatgggtaaacaagcaaaaaaaaaaaaaaaaaaaaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU31459 lncRNA upstream 63039 24085407 ~ 24087304 (+) True G25084
TU31444 lncRNA upstream 103734 24044989 ~ 24046609 (+) True G25069
TU31428 lncRNA upstream 119039 24031034 ~ 24031304 (+) True G25056
TU31374 lncRNA upstream 224189 23924239 ~ 23926154 (+) True G25013
TU31372 lncRNA upstream 227118 23921920 ~ 23923225 (+) True G25011
TU31520 lncRNA downstream 57834 24211682 ~ 24213444 (+) True G25134
TU31525 lncRNA downstream 74788 24228636 ~ 24228910 (+) True G25138
TU31536 lncRNA downstream 100942 24254790 ~ 24255913 (+) True G25148
TU31598 lncRNA downstream 287449 24441297 ~ 24469767 (+) True G25196
TU31599 lncRNA downstream 317191 24471039 ~ 24473147 (+) True G25197
AMCG00007622 mRNA upstream 72995 24056196 ~ 24077348 (+) True AMCG00007622
AMCG00007618 mRNA upstream 98516 24048234 ~ 24051827 (+) True AMCG00007618
AMCG00007620 mRNA upstream 105942 24041906 ~ 24044401 (+) True AMCG00007620
AMCG00007621 mRNA upstream 133730 24013330 ~ 24016613 (+) True AMCG00007621
AMCG00007619 mRNA upstream 143033 23997437 ~ 24007310 (+) True AMCG00007619
AMCG00007631 mRNA downstream 38444 24192292 ~ 24194481 (+) False AMCG00007631
AMCG00007633 mRNA downstream 75674 24229522 ~ 24230585 (+) True AMCG00007633
AMCG00007632 mRNA downstream 102298 24256146 ~ 24261899 (+) True AMCG00007632
AMCG00007636 mRNA downstream 182713 24336561 ~ 24349947 (+) True AMCG00007636
AMCG00007638 mRNA downstream 295474 24449322 ~ 24461405 (+) True AMCG00007638
TU31151 other upstream 956822 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 1867385 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 3083560 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 5094210 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 5579879 18567769 ~ 18570464 (+) False AMCG00007433
TU31514 other downstream 38373 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 3929974 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 4299161 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 4849247 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 5611980 29765828 ~ 29775035 (+) False G26258

Expression Profile