RNA id: TU31520


Basic Information

Item Value
RNA id TU31520
length 1495
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G25134
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24211682 ~ 24213444 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAGATAAAGTGGTCCATGTGGCCCAACTTTGTGACCAACTGGCTAAGGGTGTTGCAGATTGTTTCCCACTGCTCCTGACTCTGCTCTTCCAGCCCTTCAGCCAGGGCCAGATGTACCTCCTTCATGTACATAGGCATCACCAGTGGCGTACGCACCATTGGAGTCCCTGCgcagaaaacacagacatacCGCTGCATGCAAGGACAAGCACCCCAGAAGCCTTCAAGAGACTACAGCACAGAATTAAGTGAATTGAGCAATTGTAAGTGATTGTAATGTTTTGCTTGCTGTATCCCttcaatgaaaacatttctgatAAGACCATTTTTgacttttataataatataagtcTTTCATAAGTACATTTTTCCAAACAGAGAATGTTGCTCTCCTGTGCATAAACAGGGAGGCCGAGAACAAAGAGCCCATGTTTGGGAGTGTGTGGGGATGTGAGACTGACCTTTGTTGCTGAGGCAGTACCCCAGTAAAAACTCCTCCTGGTAGGTGTTTGTAATGGTCAGTTGCTGTAGGTTCTGTGTAGGGATCAGACAAGAGCCACTGTCCAGCAGGGTCAGGGGTTTTGTGGGCTGGACACTGACAGGTAAGGAATAAATCTCCAAGATAGACTGCAGGGTGAAGGGACCCTCTGAACCAGAAACAACAATTTAGTAACTGTTGAAGTCAGGCCAGGTCATAAGAGTATGTATACCTGACTGAACTGTTCCCTCAAAATACCTAGATGTTGAAACTGTATCATGGAAGTACATAGTGAGATTAATCAATCAGATGGCTACCTATAAATCCCAAGGAAATCTAGATATGAGTTGATTTGGCATTAGCATTTTGGCCATTTTctaaattgattttaaacagcTCCTCACTTAGGTATAGGACAATAGCTAGGACAATTAACAAAACCTCAAATGCTAGTTCATGTTAACAGATAAGTTAATTTAGGAAACGTTTGCTCAAATAACTTGGCATTTGGCAGAGAAAACAGATAACAAATCAGAAGTGTGTGAAGAGTTGAAAATTAGTTAGCTGCAGACTACCTTGGTTTTGCTGGCAAATTTAGCTAAACATCTGTCTGGGATCAATTTAGACTAGCCTTGCTGGAGCCATTGTGTACAGACTCACCTGGTTTGTTCCCCTTACTGAAGACATGGAAAGCCACAGTGCTGATCTTGGTTGGCAATGACAGGACCCTCCCATATTTAGTCTCTACTACCGCTCTCTTCTGGGATTGAAGACTATGGATATGTATGAGCTGTAACGGagtAGTGCTGTTGCTGACACTGTCCAGCTCTTGTTCCCCCAAGAAGCCCTGTGTCACCTTAATGATTTTGGGGAAAGAATCCTTGAATTTGTGTACAAATTCTTTCAGTGTGTATTCAGTGTCACTCCAGCGGATTTTGGACACATCCATGCCTGCCGAGAAGATATAGTCAGTACCTGTGGAGAAGCAGGAACTACATCGAACATCTATGAGGAAG

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31480 lncRNA upstream 57834 24150343 ~ 24153848 (+) True G25103
TU31459 lncRNA upstream 124378 24085407 ~ 24087304 (+) True G25084
TU31444 lncRNA upstream 165073 24044989 ~ 24046609 (+) True G25069
TU31428 lncRNA upstream 180378 24031034 ~ 24031304 (+) True G25056
TU31374 lncRNA upstream 285528 23924239 ~ 23926154 (+) True G25013
TU31525 lncRNA downstream 15192 24228636 ~ 24228910 (+) True G25138
TU31536 lncRNA downstream 41346 24254790 ~ 24255913 (+) True G25148
TU31598 lncRNA downstream 227853 24441297 ~ 24469767 (+) True G25196
TU31599 lncRNA downstream 257595 24471039 ~ 24473147 (+) True G25197
TU31605 lncRNA downstream 263043 24476487 ~ 24499589 (+) False AMCG00007640
AMCG00007631 mRNA upstream 17201 24192292 ~ 24194481 (+) False AMCG00007631
AMCG00007622 mRNA upstream 134334 24056196 ~ 24077348 (+) True AMCG00007622
AMCG00007618 mRNA upstream 159855 24048234 ~ 24051827 (+) True AMCG00007618
AMCG00007620 mRNA upstream 167281 24041906 ~ 24044401 (+) True AMCG00007620
AMCG00007621 mRNA upstream 195069 24013330 ~ 24016613 (+) True AMCG00007621
AMCG00007633 mRNA downstream 16078 24229522 ~ 24230585 (+) True AMCG00007633
AMCG00007632 mRNA downstream 42702 24256146 ~ 24261899 (+) True AMCG00007632
AMCG00007636 mRNA downstream 123117 24336561 ~ 24349947 (+) True AMCG00007636
AMCG00007638 mRNA downstream 235878 24449322 ~ 24461405 (+) True AMCG00007638
AMCG00007640 mRNA downstream 278458 24491902 ~ 24499650 (+) False AMCG00007640
TU31514 other upstream 17201 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 1018161 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 1928724 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 3144899 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 5155549 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 3870378 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 4239565 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 4789651 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 5552384 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 11397672 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile