RNA id: TU31536



Basic Information


Item Value
RNA id TU31536
length 440
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G25148
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24254790 ~ 24255913 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGGCAACCCAGGAAAACGTGGTTAGCCCATGCCATAGAGAGCGCGAGTAGGCGGTCCAGGCTGGGGCTGGGGATGCCTGGCTGGATGGTGGGAAAGACCTCCATATTTCGCAGGATGAACTCACGCCTGGCGCTCCACTGCTTGTCCGTCTCACAATGCCCCCGGAGAGATTCCACCCACTGCGCCTGGTGGGGGTTCTGACGGAGGAACTCGGCTACAATGTCCTCTCCGCTCCTCCCCTCCGCCATCACTGCAACACCATGTAGGCTTTAGTGTTAATCAGCACCTGGTACCCTTCTGCTGGGATTCCCAACAGCTGTCCTTGTTGCCAGAATTGAACATTTCCAACTAGGTCTCCCCTTTAATATACAATGCCAGTGGCTTCACTGCTAACACTGCAGCCATGCAACCTCTCCTGTAGCGCAACTCATGCCGTGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU31525 lncRNA upstream 25880 24228636 ~ 24228910 (+) True G25138
TU31520 lncRNA upstream 41346 24211682 ~ 24213444 (+) True G25134
TU31480 lncRNA upstream 100942 24150343 ~ 24153848 (+) True G25103
TU31459 lncRNA upstream 167486 24085407 ~ 24087304 (+) True G25084
TU31444 lncRNA upstream 208181 24044989 ~ 24046609 (+) True G25069
TU31598 lncRNA downstream 185384 24441297 ~ 24469767 (+) True G25196
TU31599 lncRNA downstream 215126 24471039 ~ 24473147 (+) True G25197
TU31605 lncRNA downstream 220574 24476487 ~ 24499589 (+) False AMCG00007640
TU31607 lncRNA downstream 228373 24484286 ~ 24490421 (+) False G25203
TU31608 lncRNA downstream 228373 24484286 ~ 24490748 (+) True G25203
AMCG00007633 mRNA upstream 24205 24229522 ~ 24230585 (+) True AMCG00007633
AMCG00007631 mRNA upstream 60309 24192292 ~ 24194481 (+) False AMCG00007631
AMCG00007622 mRNA upstream 177442 24056196 ~ 24077348 (+) True AMCG00007622
AMCG00007618 mRNA upstream 202963 24048234 ~ 24051827 (+) True AMCG00007618
AMCG00007620 mRNA upstream 210389 24041906 ~ 24044401 (+) True AMCG00007620
AMCG00007632 mRNA downstream 233 24256146 ~ 24261899 (+) True AMCG00007632
AMCG00007636 mRNA downstream 80648 24336561 ~ 24349947 (+) True AMCG00007636
AMCG00007638 mRNA downstream 193409 24449322 ~ 24461405 (+) True AMCG00007638
AMCG00007640 mRNA downstream 235989 24491902 ~ 24499650 (+) False AMCG00007640
AMCG00007641 mRNA downstream 266552 24522465 ~ 24536808 (+) True AMCG00007641
TU31514 other upstream 60309 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 1061269 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 1971832 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 3188007 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 5198657 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 3827909 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 4197096 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 4747182 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 5509915 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 11355203 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile