RNA id: TU31570


Basic Information

Item Value
RNA id TU31570
length 4281
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G25176
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24350030 ~ 24354310 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttggtgATCACCAGGCTGTTTCCCTTTTACAATAAATTTGCAGTAgttctatttctttattttagatttaaagaGAGATACAGAATATTGCACACAAAATATCTGAGGAACTAAAAGATTAATACAGCGCAAAAAAGAATAACTATCACAGCGCCTTCTTTACAATAGCCCACGGCGAAAAGAAAAGCGCGGCCAGGTAACATGTGCCATTTCAGTACCATTAAGacaatttgcttattttttttaatatattttttaaaatagtattttaattccttttaaaCTATTACATACAGGATTATAACTTATAAGAGATCACATGCAGAAACAAGCAAGGCTCATTTGAATGATCCGTATGTTTTTTTACCATTGATGATTTCAGGGAGAACgttttggaaaatgaaattTGAAAGAAGTGTTGCTGTATTTGCacagcacatttattattatttttttcaattttgtttatttctttttatagaAAAATGCATCACTTGTGAGATAAAATCTGCTAAAAatgacttgtttttcttttgtttgtgtgtgtgtttttatttagaagGATCAGATCCGGCAGTCTGGTCTGTATGTTGTGTTTAGACcgatttgtgtttgtcttttgatTTTCAGTATAATTTCTGTTCATAGTGTAATTCAGATGGAGGCAATGTTGCAATCCTAGTGAACACCCGGGTGCTTTTCTATTTCGTTTTGTTGTTTCAGGGGGGGAAGGTGAAGAAACTTCTCCTTTTAAAAGTTTGAACTTTTTctcaagtttaaaaaacaaacaactactACAAAGTAAAGAGTATCTGCACACAAACAGCAAGAGCACTGAAGATTATTGTAGATCACATTCTTGCATGCCTGCCCCTTAGCTGGGACTGGGTCTTCATTTCTCCTCTGTAATCTGCATTTCTATTCATTTTCTTCAcctattactttttttgtttttgttttgttttttatggttttactTCTTTAGTTACAGCAGCTTTTAGAGTTACAAACTCtacaaagacattcaaaaatgttatttcaagtTAGTGCATTTGCTTCTAATACTAGGCTAGGTTTTGTTACATTTGTCTATtcaatgttttagttttgattGTATTAATTCAAGAACTGACTgacatatttagtttaatttgggCATCCATAGCTGACAGCTAAGGCCTCTGGGTGCCTGTTGCTAAGGACAGGTAGGGATCTAGCTAACTGGATACACCACAACAGAACTACCATCTCTAGAGACATGAAGCAGACAGAAGacgaaacaaaacaactgaCTATTTTAGTACTCTAAAACAAACGGAAAGAAACTTCTcagttaaatgtaaattatagtTGTACTATAAAAACTGACTCTGGTCTGGCTCTTGACTTCTGTCTATAGGGggataaaaacatgatttcaagCTTTCAAGACACTCAGAGAGGGCTTCTGATACAAATCTGTCAATGTTAAATTCTCCCTCAACAggccaacaaacacaaaatgcccTCAATAGGGTACAGGATCTTGTTCTTGATTTAATAGCGCCAACATCACCGTTAGGCCCGAAAGCATCTCCTTTGGGTCTCCATGACAACGAGACCTACACCACTTTCAAGCCCCCTCCCCCAGAGCCCATTCTTGTGCGTGGATAGctatttaatatacattgaaaagAACTGCtgccaaaaatacacaaatagcaGCACCCCCAAGCATGGATAGCTCCTAGTTTGTAGAAGCTATGTAGATGTAATCTACAGGACGGcttctttcagtttattttacaggTATGTAATGTTTTCATCCGAAGATGAAATCTATAGATTGCATGCATGTAAAGGCTAGCACTGTATATCTTACACAAAGAGCAAGAATGAGCTAAATAATGAATTCCACCTCCTTCTCTGGCTGATCCCACTGCAGAGCTACCCAATCTGAGGGCGGACTGGGCCCGGGCCCGATGGCTAACTGGACAGGAGCTTCTTACTATGTTTGGCTATTTTCTCTGGATATTAAAGATCTCAATGGCACTATTTCATATAGGAGCAGGGTTGCCAGTCCTGGTTATATCCCAATATGTGTTAACCAATCCCACTTCACATTGGGAAGTCCAGAACTCCACAAAGAACCGAGGAGGACAACCCTGATAAGTGAGATGCTGGGCCTAAATTGGATCAATTCTACATAACATATTCTAGAAACTGATTAGCAGAGTTTAGAAGAGAGCCACTCTCTTTTTGCTGCTTGGCGCTCACAGTGACACAGACCCCCAATAGACCCTGTCAAACCTGCCAGGTGTTTTCCCTGATTCTCAAACAATCTTTTGTTCGCTATATATTATGCAGCATTTTAAACAGAATACCTTCATAGGACAATCACTTGACATGAACAATAAATATCTAGAAGAACCCACTCTTTTTCAAAAGAGGCTCCGGTCTTTCATTCTGCTTCCCCAAAGTTGCCTCGACACACAATCACCAGGGAAATGTAAACAACGAGTCACCTCTGATTAGTGCTATAGTACTCGGGATGTTTCAAAACAATatgaatcataaaaaaaaaagataatactGTCAATATTAAAGCATCTTTacaacatcaaaaataaatataaaaaaggaaaagaaaaaaaacaataatgcaaatacataaacagtttgttaaaaaataatctacaaGCAATTTGCCAAaccattcaaaatatataaaccttttCAGTGGTCCTAACTATACTGTGGGGGTAAACACAGCCCATCCTATTCTGgatgcacaaacacagcaggcctgcccccccccacactgcaATGCCATTCGACCTTCCCACTCAATTGACCATCACCTAATTTCCTTCTGCCGTGCAGGTCTATGTGTATGAGAGCCCAGTAGAGGTACACTGTTCCTTAGCTAACAAGACCCAAACGTAGAAATGTAGCTTCATTTCCAATTTCATATTTCACCATCCAGGGTTGTAAATGACCATTTATCAGATGATAAGTGTAAACCATTTGCACAGCTTCTGCAGAGGAATAAAGGGTAAGTATCCACAGGTTTGACAGgcatgattttttaaattaaaacaaaacaaaatgtaaacatgttgtTAATCAAAGCGCTGAAATGGACGTGGGTTGCTTGCCTTTTAAAAATGGTCATTTGCATCCCCTAAATTTATGTGCTTTTGACAATGTTTCCCTTGCTACCatactgttattttaaatgcttacaaaaaaaaagtgcagtttCACTTGGTGATACATATTTGTTTGATCAGATGCAACCTTTAATCTTTTCCCCTTTGACTGCTGGCTCAGTGGGCCCTTCACACTGCTATCCTCGTCAGGCCTACCTACCCAGCGTCTGTCTGTATGAAGGATCCCCTCCGAAACCAGGCTCCCCCCCAATTCAACCTGACTAGAACCTCAAGGCACATGTGGGTGACAGTCGCACCTTCCCATCCTCACAACGTAAACACACTCACAATGTCCCTTTCTGTCATCTCAGGAGCATGTCCCACAGAGACCCCGCACAGTCTCAGTTGGCGGAAGAGTCTATTCAATGACACATCTATTTTCTACCAGAGAAATACAATTCAGTCAGGTTTTCAGAGCATTCCCACACAACGGCAAATAGATTCTATTGCTACGTCTGCAACGCTGGCAAGTGCATAAGCCCTAGCACCCCACCGCGTCTTCACGCCAGGGAACAACGCTAGGAAAAATCTTGAAATATTCAAATCAGGCTTCTGGCTCACGGAGTATCATTGGAAAACACAGATTGctcaaaataaaagaacaaatagCACAAATatagaataattattattattattattattattattattattattattattatctctgttttatttgtttttgtttttccagtgttACTCAATGGGGgggtaattattttttaataaaaagtagAACAAGAGGTTAGttcttatttttgtgaaaataacGTTATTCGGCTacagcagcatttaaaaaaagatgtttttttgttctttttgttctgtttttccatttttatatatgtatatatatgtatatatatatatatatatatatatataatatcagaTTTGTCTATTTTAACACTTGACAGTCTCCAACTAACAAGCCCAAACAGTGTAAATCCATTGATCGGAAAAGAGGAAAAATGTACAGGAGAGGGCAGATTTAGAGCAGCTATACTGGCAACTCCTGGGCCCTTAGTAAGCCAAGGTAATTACCGAGAGTTTGCGAAAGGCTTCACCCTTGTATTATTACTTCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31569 lncRNA downstream 2611 24347099 ~ 24347419 (-) True G25175
TU31454 lncRNA downstream 299594 24050148 ~ 24050436 (-) True G25079
TU31453 lncRNA downstream 299957 24049815 ~ 24050073 (-) True G25078
TU31452 lncRNA downstream 300246 24049553 ~ 24049784 (-) True G25077
TU31451 lncRNA downstream 300593 24049224 ~ 24049437 (-) True G25076
TU31571 lncRNA upstream 13859 24368169 ~ 24368373 (-) True G25177
TU31655 lncRNA upstream 78770 24433080 ~ 24507819 (-) True G25239
TU31671 lncRNA upstream 144055 24498365 ~ 24542158 (-) True G25248
TU31821 lncRNA upstream 627624 24981934 ~ 24982139 (-) True G25375
TU31834 lncRNA upstream 634535 24988845 ~ 24989054 (-) True G25387
AMCG00007637 mRNA downstream 68466 24262690 ~ 24281564 (-) True AMCG00007637
AMCG00007634 mRNA downstream 93989 24251466 ~ 24256041 (-) True AMCG00007634
AMCG00007635 mRNA downstream 163140 24150344 ~ 24186890 (-) True AMCG00007635
AMCG00007630 mRNA downstream 202009 24114555 ~ 24148021 (-) True AMCG00007630
AMCG00007629 mRNA downstream 249357 24078152 ~ 24100673 (-) True AMCG00007629
AMCG00007644 mRNA upstream 14321 24368631 ~ 24403122 (-) True AMCG00007644
AMCG00007648 mRNA upstream 109417 24463727 ~ 24464347 (-) True AMCG00007648
AMCG00007643 mRNA upstream 116725 24471035 ~ 24479836 (-) True AMCG00007643
AMCG00007645 mRNA upstream 129702 24484012 ~ 24495209 (-) True AMCG00007645
AMCG00007647 mRNA upstream 192222 24546532 ~ 24550224 (-) True AMCG00007647
TU31562 other downstream 82109 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 377365 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 3877326 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 4018219 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 4426877 19915146 ~ 19923153 (-) True AMCG00007487
TU31883 other upstream 910022 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 1276485 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 10515125 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 12885779 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 13140601 37494911 ~ 37499392 (-) True G27416

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2512954 True 4280 lncRNA 0.39 4 NC_050570.1 8228205 ~ 8265239 (+)