RNA id: TU31571


Basic Information

Item Value
RNA id TU31571
length 205
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G25177
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24368169 ~ 24368373 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTGCACGGTGAAGATGGGAGACGTTTCTTTCAGAAGATGGAaaagagtgaaaaataaaattcccAGAACCTCTTCTGACCTCCGACCGTAAGGCCAACATTTAGTCCAGAAACCTTTATAGCTAAACCTTGAATCGATTTGTGAAATGccggttgtgtgtgttttgtaatggaGAGGGTAGAAATGGCACATCTCTGTTTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31570 lncRNA downstream 13859 24350030 ~ 24354310 (-) True G25176
TU31569 lncRNA downstream 20750 24347099 ~ 24347419 (-) True G25175
TU31454 lncRNA downstream 317733 24050148 ~ 24050436 (-) True G25079
TU31453 lncRNA downstream 318096 24049815 ~ 24050073 (-) True G25078
TU31452 lncRNA downstream 318385 24049553 ~ 24049784 (-) True G25077
TU31655 lncRNA upstream 64707 24433080 ~ 24507819 (-) True G25239
TU31671 lncRNA upstream 129992 24498365 ~ 24542158 (-) True G25248
TU31821 lncRNA upstream 613561 24981934 ~ 24982139 (-) True G25375
TU31834 lncRNA upstream 620472 24988845 ~ 24989054 (-) True G25387
TU31874 lncRNA upstream 839401 25207774 ~ 25245930 (-) False G25415
AMCG00007637 mRNA downstream 86605 24262690 ~ 24281564 (-) True AMCG00007637
AMCG00007634 mRNA downstream 112128 24251466 ~ 24256041 (-) True AMCG00007634
AMCG00007635 mRNA downstream 181279 24150344 ~ 24186890 (-) True AMCG00007635
AMCG00007630 mRNA downstream 220148 24114555 ~ 24148021 (-) True AMCG00007630
AMCG00007629 mRNA downstream 267496 24078152 ~ 24100673 (-) True AMCG00007629
AMCG00007644 mRNA upstream 258 24368631 ~ 24403122 (-) True AMCG00007644
AMCG00007648 mRNA upstream 95354 24463727 ~ 24464347 (-) True AMCG00007648
AMCG00007643 mRNA upstream 102662 24471035 ~ 24479836 (-) True AMCG00007643
AMCG00007645 mRNA upstream 115639 24484012 ~ 24495209 (-) True AMCG00007645
AMCG00007647 mRNA upstream 178159 24546532 ~ 24550224 (-) True AMCG00007647
TU31562 other downstream 100248 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 395504 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 3895465 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 4036358 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 4445016 19915146 ~ 19923153 (-) True AMCG00007487
TU31883 other upstream 895959 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 1262422 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 10501062 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 12871716 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 13126538 37494911 ~ 37499392 (-) True G27416

Expression Profile