RNA id: TU31598


Basic Information

Item Value
RNA id TU31598
length 3696
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G25196
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24441297 ~ 24469767 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTATAGTATCAACCACCTCCAACCGCACACTACACAAGAGATCTGTCAGAAGTCGATCAAAACCAAGCAGCAGATCTTGGGGAAAACTCCGCTAAAAATGGGAGAAAGGGATTTATAAAGAAGAAAGATTAAGagaaagataattattttaaagaacatttatataaaaagagTAATTTTACTGTCTGAAAAAAAAGAGATTATAAAGTAAGAGTGCCCATCTTGTATATACAAACACCAAAGCAAGCTAGACCTAATTCTGTAGTCCATCTGGCTGATGTATTGGTTTCAAAGTTTCACTCTGTGCCTTGTTTTAGGGGGATAAAATAAgagatgattttattttgttgttgttgttcttgtgcCAAACACACTGTAATAGTTTAATGATTCctattgttcattttaatttgtgctcTAATTGGATTTTGAGACGTCAGACCAACCGTAGTTTTATCCAGTCTGTGAGTTAGGATGTTGAACCTATTTTCAGGTCGTTTGCAGGGCACCTATAAGCCACTTCACCCATATTGGAGTGTGCCCTCAACAGCTGGATAAAAACAGCAGCATTCTTTGATCGCTCATGGTTTGCTTTCCAGACACCTGCTGGAGAGATACATTTTCCTGAAAACCAGGTGTAAATATTTCATCCAGGCCAGCTGGTATGATTTACAATGTATCGGCACTAAACTATAAAAACCCAAGCTGTGTCACAGAAGTCCAAAGAGAGGTCATCGTCTCAGCTCAGTTCCTTGTCAATGATACAAAAAAGGTGCCAAATTGTAGCCTGCATGCAAAATACACTGAGGGATTGTAAGGGCTTGCCTTCTTCCACTAGAGTCTTCTGTTACAGGGAGCAGAGGGCCAGTGTAGTGCACAACACAGATAATTCAGATATTTCGATTGCATATTTAGCTAATTGTGGATCCACCAAATTTAACACAGCATAGGAACTGGGTAAGGGATAGTGCATGACAGGAACTCTAAAATAACCAGTCAAATCAATCAGGACatgtgtttgtaatgtaatCTGCATACAGGGGGATCTTAGACCCAGTATATTCAGATCCAGGCATGGAGAACCAGAGAACTCAATACAATGAACACGGGGGCTTACATCCTATTGactaatcttgtttttttctgggggAAGGTAGGTctaaaaaatgtgaatatagAATTATTTATTGATCCTTCATAGTGCCAGGACCTGACTGGCACATGGACTGGCAGAGCATCCTGCAATCCACTGAGCCTGGCACACTCCACTATGGGAGGAGGGTTAATTCTCTCCTCAAGGCACTGGAGTGGCATGGAACATCGCTGCCAATCAATTTTAGGAAGACAAAACACAAGGTATTTCTGGCAACCATAGGATCCTAGTATTcatgtactttgtttttgttttgtttttattttgcgttgtcattttcatttttaattaagcaaaatataACTAGATTTTTCTAAATATCGCCTGTGACAGTTTCCCTCCCTCAGGGCTGTGCAGTGCACAGGGTTTCTGTGGGATCAGTACAAGGGTGGCAAACCTGCTTACAGCAACTGTTCTCTTGCTTTTTTCTAGTCTGACGATCTTAGTAAAACAGCACACCTCAGGAAATCATGCAAATTCATAATAACAGAGCAAACTTCACTCCAGTAGTCTATTgctttgtaatatatacaggGTTGAAATATCAGGAGCCTTAGAAGGGTCCAAAGTCCACCTAAACAGGAGTATCCAGCCCTAATGTCTTTGTGAGTCTGTAGTCTATAAGGAGGTGGTGCCCCCCAATCCTTCATGAACATTCTGTACTCCACATTGCTCTAACCCTGGATACCTTTGGAGCAAtgaaaatatgttcaaatgaaGAAGAGATTAGGAGAAACCTAAGGGAAATTCCATGAGTAGCAGATACTCCTGGCACTTTTTTTAGGGAAGTTAATGGCATCATTCCTTCCAGAGTACGATTCCCAGTTTAACACTGGCGCCTGTTTACCTCAGAATCAGCTGGGAAATGCAGTGAGGTGTTAGTTTCATTGAGGTAAGTCACAAGTCTGATAGCAGATGCTGTATACTTGAATGCCTACAACAGCGAAGCGCGCTTTAAGATATTTTAACCctatatatatagaatgtatttgtgaaaactGGTAGACATGTTAATATTAATCCTGTGAAAGTCCTCTCTTGCAGTTGTGTTAGTGTACCTTGATGTTGATATTGACGTCCTTCATAGGCCTCTTGAAAAGAAAGCTCAAATGAATGGAGCTTTTGTGACATTGACTAAGGGCTCTCCAATTCATTTCTGGTGacaaacattaaatgaaagCCTCCATTTAGCCTTTAGGACCCACCATAAATTATAGTGGATAACGGCAATTTTTAAGCTTACTTTCTAGAGCCTAGAACAAACTGAATTCTGAGTTGCTCTGTACTGCAAACTGACATAAGACAACTTGTGTCCTCACCATCCATGTAAAGGGCTTTATGCTCACCTAATCACTGCAGCCCTCGCTGGGATCAGCAGGAGTCCCCAAAGGCCAGACACAAGCTCCTTATTGAAAAGCTAAAATGTTTGGAGAATTTTGCTTAATTGTGAGTATCAACCAATATTTTTAGCTGGCATGATACATAACTACTTAAAGAATCTAACTGTTGGGAAATTGGAGGTACGGAAATGTTtccattaaacatatttaaacaaaaaagtcgTTATACTGACCATGTATAATGCTGATGATTGTATTTGGCAACGCGATGTGCTTTGACATTCGATACACCTCAGCTGAATGGTTTACCTCCAAGGTGTACAAAGACTTATCGTGTGAGTATCAAGCTCAGAACAGACCCTTTGGTTCAGTGCAGAACACAGGCAGTCCAGCACAGGGAACATCTGGACCGGAACATCTGTGGGACCGAAACCAGAGGCGATGTGTTCTAGATTTACAAAGCACAAAGCAGGCCTGGTGGCAGCAGTGCTTTGATTAGAGAAGGCTGTCGCCTAGCAGCtacagtgcaatacatgttcttGACAATGGGGTGTTATAAAGCACTCCTGCCTATGGATTTAACATCATTCTTTATGCACATTAGTATTCACTTGCATTGCACATAGATCAGCAGTAGTGGCATTtgcctgtatttttttataattgaatttcatgttttaaactcCTTGGTAACACACAATAGGACAAAGCCAGGAAACAGTTGCTGTGATATAGAGTGCACATcctttcatttttgtgttaatCATGTGACACAGAGCCTGTGTTTATCAGTGGTCTACAGCATGCCAATGTACCCCAGAATTATCAAAAGAAACAATgtctgttttcaaatatttgtatttcgaTTTGCTCAGAGATCATGAAGAATGCTAAATAAAAcgtatgtattttattcctgGTAGGACTTTAGCTTTATGTGTGCATGGGCACAGGAGAATGTTTACAtgattgtgcgtgtgtgtgtgtcgctgaCTGTTTGCACAAACACCCTTTtgtttgtgcatgtttgtgtctgtgaccggttacagaacaaaaaatagaaaagaaaacatgtaaatggtAAGTATGTGTGATGAATTCAAAGAGAGTATTTtccaacaaaatgtattgttacaaAGCTACAAatgatataaattatatatatattgaaatattttaatatgtacacATTAAAAGTACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31536 lncRNA upstream 185384 24254790 ~ 24255913 (+) True G25148
TU31525 lncRNA upstream 212387 24228636 ~ 24228910 (+) True G25138
TU31520 lncRNA upstream 227853 24211682 ~ 24213444 (+) True G25134
TU31480 lncRNA upstream 287449 24150343 ~ 24153848 (+) True G25103
TU31459 lncRNA upstream 353993 24085407 ~ 24087304 (+) True G25084
TU31599 lncRNA downstream 1272 24471039 ~ 24473147 (+) True G25197
TU31605 lncRNA downstream 6720 24476487 ~ 24499589 (+) False AMCG00007640
TU31607 lncRNA downstream 14519 24484286 ~ 24490421 (+) False G25203
TU31608 lncRNA downstream 14519 24484286 ~ 24490748 (+) True G25203
TU31604 lncRNA downstream 21233 24491000 ~ 24499589 (+) False AMCG00007640
AMCG00007636 mRNA upstream 91350 24336561 ~ 24349947 (+) True AMCG00007636
AMCG00007632 mRNA upstream 179398 24256146 ~ 24261899 (+) True AMCG00007632
AMCG00007633 mRNA upstream 210712 24229522 ~ 24230585 (+) True AMCG00007633
AMCG00007631 mRNA upstream 246816 24192292 ~ 24194481 (+) False AMCG00007631
AMCG00007622 mRNA upstream 363949 24056196 ~ 24077348 (+) True AMCG00007622
AMCG00007640 mRNA downstream 22135 24491902 ~ 24499650 (+) False AMCG00007640
AMCG00007641 mRNA downstream 52698 24522465 ~ 24536808 (+) True AMCG00007641
AMCG00007639 mRNA downstream 103119 24572886 ~ 24574030 (+) True AMCG00007639
AMCG00007650 mRNA downstream 109364 24579131 ~ 24586370 (+) True AMCG00007650
AMCG00007649 mRNA downstream 123529 24593296 ~ 24620644 (+) True AMCG00007649
TU31514 other upstream 246816 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 1247776 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 2158339 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 3374514 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 5385164 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 3614055 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 3983242 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 4533328 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 5296061 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 11141349 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile