RNA id: TU31608


Basic Information

Item Value
RNA id TU31608
length 5217
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G25203
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24484286 ~ 24490748 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taatcaaaatggtTTTCTAACTTATCATAACACTCCTCCCattctttaacaaaaaatacatccatttttattaaacatacaaaaaacaaagccgGGAAAATTAAGGAGTTGGCTGCAGAGCTGATGAACAAGAACACCTCTGTGCTAAATGAACACGACCAAATCAACACAATTTGTGAAGCAGGGTTACAGGAATCAAACTATTCATGTACCCTTAACAAAACATCACATTGTCCTAGATGACACTCGAACTGTAcaccattacaaatattttacagtgtttcaAACTCTCCACTTAATTTATACCCTTTAATCTACCGTTATGCACAGCAGAGTGGAATTCACTCCCTTTTTCTCATTCTGTACTCTATATATCCAGCACATCCACGATATTTAAacctaaatgattattgcacaagCCCTTAATTCTTACTTCACAAGGGGGTGGGGctcttttattcatgttaattaaAGGTCAAAATATGTTCCTTTTAGGAGTTTCATATATCACACATGATGTTGTGGCATATggtcaaatatatatagaacGTCATATAAGAGTCCCTTCACTGCAGTGGCTAGTCTCTGGACAGTGCACATCAAAGCAGAGGGATACTGTCGAGCCTGAGAGCCGACTGCGATTCTAGGCAGTCGCCACCATAATACCGCCAGGGGATAAGAAGTGTCTGGATACACAGTAGACTGATATTGAGGTTCACAGCTACGGCAGAACACAGGCACAGGGAGGTCATGTGATGTGCAGGCAGAATGTCCGGGATAGAATTAGGATTTCAGGACTCGTTACGACTGgtagaaaatgaaaagtgaCACACACAATAGAATGCAAGAAGTTATGTGCCACAGTGCCACTGGTGGGAGTTAAAAGCATCTCTCACTAAGAAGTAACTACCCCATTCCAGGAAAAATACATCcatcatttaatacattatattctaAGAATCACTGCAATATCATTCCCCGCTGCAAACTAGAATATGTGATGAAGCATGTTAAAAAGCAGAACTACATCAGGACCCCAATAGGCAAAGGAGTGACAATTTTGCAAAACTGCTATGCaatctaaataaaatgatacatataaaaacagatgGGCACTCGTCAGTAGATCACTCTTGCCATTCAGTCCTAACCTGACCTAAAATGAATTACACTGGATGGCATATTCTTCAGGACGTAGTAGTACTGGACACAGGCCCAGCTGTTGTTAGCACTCTGGGGTAGGATAATGTTATGTTTCCATCAGCCAGGTCTCATAGCAAGTCACACAACAACAGCCAGGTCTTAAATGATCAGTGTTGCAAATACcatcaaaaaatacatttaaatcaaaagtagGAATAGTTACACAGCTTAGCCcatatgaaaaacacatttctgtggatttatggttttcattttaaatgtagttgaTGTGCAAACTTCTTCTGTGTTGCACTATTATAAATGCCATTTTAGCtagttaaaaaaactaaatcaaagcACTCTAGTGGGAGTTTTCAAGACAACcctatttttctttcctccttggATTGTATGATCATAACGCTGCATATCAATGGAACTGGCTTGCCCTGAGCAGAATCAGGTTCTGAGACTTTGTCAATGTATTTAAGCATATTTATACCTTTGACCCCTTATCCTCTGACTGTGAGACAGTACTATGTATGGAAATAATAgcaaaataatcattattagtCTAAAGTTTCAGAATACAATTTCTTTAACTACATTGTAAACATGAGATTCACATTAAGAATCCAAATATGGGCTTccttatacaaaatacaaaatcgaTATAATTGGACAGCACTGGGTTATGTGAAATGCACTAAATGTCTATCATTTACCATTTATTACATCTTATTGATATGGAGatcaatgtttcttttaacaagCTACAGAGGACAAGGGTTAAAAGGTGATGCGATTACAGTGGGTCAGCCCACACTGACTTAATTAGTTAGCGAGTGAGGTGCACTGCTGCCCCCTGGTGTAGTGGTAAGGGCAGTGCAGGGCATGGCAGGTGGGCAGAGTTGAGGAGGCGGGGTCTGGCGAGGCGTGGTGCTGGGTGGGGTGAGGTAAGGGGTGTGGCTAATCTAATCATCACAGCCCAGGAGCTCCATGCGCAGTGTGATCCGCTCATGCCACGCCCAGGGGAGGAAGCGCACAAACCGAGCAAAGATGGGTGGCTCGATTTGATTCTTCTTGTGGATGTTATTGTCAATGTTGCCTCCGCTCTGGTTTTGTCATCTTTATACACTGTCCAGGACTGGCCATCATCACTGTAGGCAAGCTTAAAGGCCGACACAAACTGGACGTTCCCAAAGTCCTTGGCTCCCTGGGTGATGATCGCTGTGACTCGTTTTGGAGATTGCAAGTCCACCTGTAGcacagagagagtgaaggagatcatgactgtgagagagtgagaaaggTGTGCGATGTACTACATAATAGACTCTCTGTCTGAATATGTAACTTCAAATATCTTTTCATATTTGCTTTAATAGTATGACTGTACAAATGACAGAACCtacaaactatatataaatatatatgatgtggAGGTTGAGTGAGAGATTTATCAACATCCACAGGACAGAGCCCCTACCTGCAGCCACTCAGAGCGGTTGTTGCTAAGTGCCGTCCAGGCGTTGGTCTTGCCCCGCTTGTCAAGGCGGGCGAAGTGGGGATGCCAGGTGAAGGCATCAATGCCCCATGTGCGAAAGGCACTGGAGGCTGACACCTGGCTGTCTGAGATCAGATAGGACTTCATGCCCAGGGGCTCAGAGCAACCTGCCGTGTTTAAATACACTGTGAACAAGACAGTAAAAGAGAGTGATAGACACACAGGGAGCACTGGCACAAGCAAACACAAACGAAAGTGAGTAATGGACTGCGCGTGTGGCATGCGCTGGGGCAACACGGCGAGGCAGGGCAGCGTGGTGCACAGTGAAGCATGCCCCACAGGAAGTCAGCTGTGCGTCTGCAGCAAAATGTCTGGAGTCTTCCTCACACCGAGCACAATCATGGAAGCTGCCCATTGTTTTCAATCCAAACTGGAGTTCTTtgttataatatgaatatgcataatggtttttttttttttttcccaaatttGGACCCTGTACTGAAATCTGTAATTACTGCAATTTGGACTGAATTATCAAGCTGCCTTTTCACAAAACAGAATTGCTGAAACTTGCCACATTGCTGAGATGTTATGTTATGCATGGATCTGGATTAAAGAGCaataagaaacatttgaaaatgtgcagaTGACACATGGAGGAGTGAAATCAGAAAACCACACAGAATCAGCTGTGAGGGGGTGGTAGGATTAGTGACAAGTCGCAATTGCAGGATGATTTGGTGAGATCAAATCAGGGTAATGTATCGTGCAGTGTAAACAGTGAAGTTGAGCTCTCCTGCGGTTTGTGTATTGCGTTATGCAGAGCCCATCTGTACGGAAATGAGCAGCTTGACACAGAGATAAAatcacaaacaacaacacaagtacaACACagagcaaacacaaacacacccagtTTGGGGAGTTAATCTTTGTGAATAACTCAGGGTCTGTTGTAGACGGTCATGCAGAATATGGATATCTATACCACACAGGTGGAAGTATTTTGCACAAAATTGCACAGTACCAAGCATTCAAATAGCAATCAGAGCTGCAGTGACTGTACTGCCTTATAGCTGGCATTGATTTTTCCACATACTCAACAGTTATTACTATTGAAAGCAAAGTAGtctatatattttctaaaggccataaaaaaaaaaaacagatttcctCAAACTGTAAATCCCAAATTCTATCTGCTTAATTCAGCATTCTGTCAATCCATCATTGATTCTAAATCCCCGGGTGAGTGGGAGAATGTGCTTTTTAATCCACATGTATAAATCTGATCCACCCCCACATGTATCAAATTATAAACCTATCTGTAAATTAGTCTGTCGAAATGTTCTGGGAGTAACTCTCACTGGAACAGAAACAAAGCAGATAGTGTTCTTTCACTTAACTAATATGCACAAAAATTTTAAGCAAAACCGCCGTAGAATCTCAGAACTTTTCCCATTTCGGATCAGCAACAAACCAGAAGCCACAATTCTGCTACCGATTTCTCACACTCCTGAGGGTCAGTGAATGAAGCCCATGTACTTCTACCTCctttccatccatccataaCTGCCCAATAAAACTATAACTTTTCCTTACTGTAGGACATTCTCTGTAAAGCACTTTATAACACAGATTAACCTGATTTTTTTGCAACAAAGCAAACGGGTGGTGTTGAACACACCTGCCTCACAATGATCGCTCTCTCACATTTGAAACAAAGGTCTCATCTGAGTGACACtggagattttaattaaaagggaaCTCTACTCTATCCATCCAAGATTGAGTTTTACCATTTAGCTCACAGCCCACAAGCTCCATGCGCAGAGTGCAGGCATGCCGACACACCAACGGTACAATGCGGATGTACTGCGCCACGATGGGCGGGTCAAACAGGTTGGTCTTGGTGCCATCGTTATCCACGTTGCCAACAAACACCTGGCACAGGATAAAAGAGGTTAGTGTTTTGGCTTTtcattgattaaaacaaatacttcgCAAAAAGTCAAGCTGAAAGTGGACTGCTAATGAActatttcataaatatattgtgtttaaatttaaGGATCAATGACACGGCAGCATCAATATGACAATCCTAAAACTTTAATGCGGCACCTAGAAATAAGGATTGAAATTCACAAAACATCTGTTAATTTACATGGACCTTATCTTCAAATCGATCACCTTAGCCTGGCTATTATAATGAACTAAAACTTCACCTTATCTTTCTTCTGCCCTTCGGTCTTGTAAATTGTGTAGGTCTTGCCATCGAAGCTGGATGTCACCTTGAAGGATTTGATGTACTCTGCAGTGCCCATGCGACTGGCACCCTGCGTGATAATCCCAGAGAGACGCATCTTCCTCTGCAGGTTGCTCTATCCAGGGGTTCTTATCATGGGTGGCTGAGGTCCAGGCGTTGACAATGCCCTTGTTGTTAAGTCTGGCGAGCTCCGGTCCCCAGCGTTGCAGCCCCAGGAAACCATAGTGCACCGAGGAGGACGAGATCTGAGACTCTGCAATGCCCCCGCCCTCCATCCCCAGCATGGAGATACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31599 lncRNA upstream 11139 24471039 ~ 24473147 (+) True G25197
TU31598 lncRNA upstream 14519 24441297 ~ 24469767 (+) True G25196
TU31536 lncRNA upstream 228373 24254790 ~ 24255913 (+) True G25148
TU31525 lncRNA upstream 255376 24228636 ~ 24228910 (+) True G25138
TU31520 lncRNA upstream 270842 24211682 ~ 24213444 (+) True G25134
TU31604 lncRNA downstream 252 24491000 ~ 24499589 (+) False AMCG00007640
TU31603 lncRNA downstream 8186 24498934 ~ 24499589 (+) True AMCG00007640
TU31615 lncRNA downstream 63520 24554268 ~ 24564852 (+) True G25209
TU31739 lncRNA downstream 326594 24817342 ~ 24861868 (+) False G25300
TU31738 lncRNA downstream 329351 24820099 ~ 24861868 (+) True G25300
AMCG00007638 mRNA upstream 22881 24449322 ~ 24461405 (+) True AMCG00007638
AMCG00007636 mRNA upstream 134339 24336561 ~ 24349947 (+) True AMCG00007636
AMCG00007632 mRNA upstream 222387 24256146 ~ 24261899 (+) True AMCG00007632
AMCG00007633 mRNA upstream 253701 24229522 ~ 24230585 (+) True AMCG00007633
AMCG00007631 mRNA upstream 289805 24192292 ~ 24194481 (+) False AMCG00007631
AMCG00007640 mRNA downstream 1154 24491902 ~ 24499650 (+) False AMCG00007640
AMCG00007641 mRNA downstream 31717 24522465 ~ 24536808 (+) True AMCG00007641
AMCG00007639 mRNA downstream 82138 24572886 ~ 24574030 (+) True AMCG00007639
AMCG00007650 mRNA downstream 88383 24579131 ~ 24586370 (+) True AMCG00007650
AMCG00007649 mRNA downstream 102548 24593296 ~ 24620644 (+) True AMCG00007649
TU31514 other upstream 289805 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 1290765 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 2201328 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 3417503 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 5428153 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 3593074 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 3962261 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 4512347 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 5275080 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 11120368 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile