RNA id: TU31671


Basic Information

Item Value
RNA id TU31671
length 1877
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G25248
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24498365 ~ 24542158 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttacaagaaaataatttaattcggaacacaattattgtaatttgtttttcttaaaatattacatCACACACCCTTGGTttctgaacaaaaacacacaagtgaTCTGGAATCCATACTGAAATGTGGTAACACCAGAATGTCAAATTACATCatcatgacaaaaaaaaattaagagattagTAAACGAAACGTAAACCCTTGAATGAGCAGTTAATTacttacatgaaaaaaaatggaaacatcgCTCTTTGCGTTCAGCTCAGAGATCTGCTCCAAACCCCCACACCTCAACTCTGCTCTACACCTGATGACTCCTGGGAGAATGTGGAAGAGTTGTCCCTCGTCATCAGACCTGGCTCTAGTCATACCAAATGACCCTAGACACTGGATTTGTTTCCATTGAGAGCTGGTGTCAACAGGGCAGTAGGTGTCTGCTGAGTGCCTGAGCAGAATTATTAATCCCAGCAAGCCACCAGCATGCCTTTTTGCTTCGGGGAAAGAAACAACTAAAGAATGGTTAATGGAACCAGCAGCTGATATCACAATTTTCCTCCTAAAACTATACCATCTCCCCTCTACCAATATGAAAATACAACTTGAAGATCTGTTAATAATATGTCAGATCCAGTAATTGGTCTAAGCAGTCTGTTTGCATGAAATATTAGAACAAACCTGAAAACAGCTACTGCTTTGTGGTCCCACgtgtatatttataatgcatttcctACTCAAAATAATGTGGGGGTTTAGTAAGCAAAAGGAAAGCCTTTTCTctgctgtattttcatttaataattataataattataataataataataataatgaccataTAACAAGTGCTACGAATTAAGAACAACAATTTTAGTACTTTAAATGTCTTCTCAATAACCATTTGCCGCAGTAAAGAAATGGGGGGGAAACGGCATGGGTTTACACATTCGCCAATATCCATTGtttataagaacaaaacaaaaaatctctCTGGTGTACACAATTGCTCCGCTAATACATATTGTTCATCAAGGAAGTCAGCAGAGGCTTCCAGGATCCAGTCATcccatttctttaaaaacattagaTTTAAATGTGTGCCAGCTACAGATAACATACAAGCCACCATCAACCACAAACACTTCCCCTGGTccctaataaatacatatttaaatgtctaCATTGTCATGGTTTTAACTATTTTGCAGTTGTCACTAAGGTGTCATTTACCTCCCTTTATTTAATACCTAAGAGTGGCGATTTTATGCAGACAAGCACATCCATACATCCATAAGCACTCCCAAACGCCCATTTGCACACATCCACTcaaaatgataataacaataatcatcaaatcaaaaatatacaaaaacatagaAAACTAAAAGAGAGGCGGTGGTGAGAAAGGCCCCGTTCACTTCTGGATGAACAGGACTACTCTGCTACTGTATAGGGCATCACCCATCACTGTTCTAATGCAAGAGAATAAGAGACCCAAAAGAATGTCCAGCAGCCATCTATACAATTTTTATATccatatacactgatcagccataacattatgaccacctgcctaatattgtgtaggtcccccttttgccaccaaaacagccctgacccgtcgaggcatggactccactagacctctgaaggtgtgctgtggtatctggcaccaagacgttagcagcagatcctttaagtcctgtaagttgcgaggtggggtctccatggattggacttgtttgtccagcacatcccacagatgctcgattggattgagatcttgGGAAtatggaggccaagtcaacactttgaactcgtgattcattagaccaggtcaccttcttccattgctccgtggtccagttctgatgctcacgtgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31571 lncRNA downstream 129992 24368169 ~ 24368373 (-) True G25177
TU31570 lncRNA downstream 144055 24350030 ~ 24354310 (-) True G25176
TU31569 lncRNA downstream 150946 24347099 ~ 24347419 (-) True G25175
TU31454 lncRNA downstream 447929 24050148 ~ 24050436 (-) True G25079
TU31453 lncRNA downstream 448292 24049815 ~ 24050073 (-) True G25078
TU31821 lncRNA upstream 439776 24981934 ~ 24982139 (-) True G25375
TU31834 lncRNA upstream 446687 24988845 ~ 24989054 (-) True G25387
TU31874 lncRNA upstream 665616 25207774 ~ 25245930 (-) False G25415
TU31876 lncRNA upstream 665616 25207774 ~ 25247379 (-) True G25415
TU31882 lncRNA upstream 710558 25252716 ~ 25256361 (-) True G25421
AMCG00007645 mRNA downstream 3156 24484012 ~ 24495209 (-) True AMCG00007645
AMCG00007643 mRNA downstream 18529 24471035 ~ 24479836 (-) True AMCG00007643
AMCG00007648 mRNA downstream 34018 24463727 ~ 24464347 (-) True AMCG00007648
AMCG00007644 mRNA downstream 95243 24368631 ~ 24403122 (-) True AMCG00007644
AMCG00007637 mRNA downstream 216801 24262690 ~ 24281564 (-) True AMCG00007637
AMCG00007647 mRNA upstream 4374 24546532 ~ 24550224 (-) True AMCG00007647
AMCG00007642 mRNA upstream 16897 24559055 ~ 24562456 (-) True AMCG00007642
AMCG00007646 mRNA upstream 21637 24563795 ~ 24570297 (-) True AMCG00007646
AMCG00007652 mRNA upstream 72342 24614500 ~ 24624473 (-) True AMCG00007652
AMCG00007651 mRNA upstream 87348 24629506 ~ 24645364 (-) True AMCG00007651
TU31562 other downstream 230444 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 525700 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 4025661 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 4166554 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 4575212 19915146 ~ 19923153 (-) True AMCG00007487
TU31883 other upstream 722174 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 1088637 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 10327277 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 12697931 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 12952753 37494911 ~ 37499392 (-) True G27416

Expression Profile