RNA id: TU31739


Basic Information

Item Value
RNA id TU31739
length 2052
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id G25300
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24817342 ~ 24861868 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCCCTGAGCTCCATATATCCGCTTATCCATCAAGAGTAAAGGTGGGGgatcagagaaagagaaagagagggagagggagagaaagagcgaCTGCAAGTCAAATATGACTATAGATGGGACAGACACCAATGTACGTTGTACTTTTGAACTTATCGTTCTTGGAAAGATTTACGACAGATCCTCCTATAATCGAAAGGGACACTGGAAGAAGTCTGGGGACCTGCAAGTGCTATGAGGATGTGGCTACAAGCCCAGCGGCTGCCAGCTATTCCCACCATGTCTCGATGGAGGAAGAACATAAAAGGGCACaatctttatataaaaaaatcaaacaaacaaacaaaaaatccgGTCAATCCCCCAAACCCCCCTTCccttacccccccacccccaggagACTTTAGTGCCATCTGTGCCCCCTGAGAAACAGCGAGACACTTCCAACCGATGCCAACGGGGACAAAGAAGCTGCCAGCCGCTGCCGTCCCCCGCCCTGCCAGATGCCATTTTGTGTTCCGGAGaactgtgagagtgtgtgtgggtgtgctgAGGAAGCCATCTTGAAAGGAAATCTTACTGCTGCTCCTAAAATGGCTGTGTTGGCACGAGAGCTGGCTGTGAAGTTGAGATGTGATGTCTGTCTGGGGACTGAGCGACCCTGCTCCTTCTCATGATGACTGCGCAATAACCCAGACAGAGACTGGCACACACCCAAGGCCTCCGCTAGAGCATGTGCCAACTTGCTGGGTATAATTATCTCCAGGCAATGGACCAGTCTGGGTGGACTTTACACAGGATAAGCCTTTGAACTGTGGACACCAaggcacacaaaaacaagaggGATTTACACCGGGAATAGAAGAGACtccacatttaaaaaggaaatgtgtgCATTGCCCGTGATTGGTGCTGTAGTCTCATGTGATCCTGACAGAAAGCAGGCCAGAGACAAATGTATCCGATTCCAGTTTATTCTAGTTAGAAAAAGTTTAAATTGCTGTAAAAAACAGCAATACTGTATTCAGTTATGTTGTTCTTCTGTACCCCTTCCCTCCAACATGGTGAAAACAGCAGCAGTCCAACTTTGTGAGGAAAAGGGGGGACAACTGTCAGAACCTAATATTAAACCTGCATCCCCGGTCTCATTCCCCTAAATAGGGCTGACAATCAGCCCTCCATGCCTGTCACTCTATCACTACAGGGAAGTGTCACAGTCATATTTAAAGCAGCTTCTGATTGACCTCACCAGGAGGTTTAGCTTCTTGGCCATTAAATAGTATGGAATCATTCAGTCTTTAACCCTTTAAACAACAGCCACAGAAACAATCACTAGAGAAGGAAAATTCTGACAGATTCTTGATTTCGGATGcattttgttataataataataataataataataataataataataataataataataatgataatattgtaTACCCTCTGTCCAACAGGGTTGCAtgataaacaaaacagtcaaaataGTGAAgttcataatatatataaataaacttaatttaatgtgggtatgtgtatatacaaatGTTTCTAATGTACGTAGATAAAATACAAGACTGAAttgcatttataatgtatttatgtatgggtGTTTGTTTCATAATTGAAATCCACAATTAATATCAGAAACAATTATACAGCACCAGCAAATATACACGGGGACAGAAAACCTATAACTGATAGTGGGAGCTGTAAAGCTGCCAGGCTTGCTCTGACTTGAGAGAAGGGCTTCCTAGTGTATGCCCAAACTCTCTGCAGTTACATGGAAAAAAGTGGAGGGTGCAcactggaattaaaatatttccttttgtcTAATAATAAGTACACAGATCTGTGTGTTTAGGGGATGATTGCACATTTCactatgttttaaaattgttgaACTAGTCATACACTTAATTCTCTTCATACAATGCACACCATGTAAACTGTTAAACTGCATCaaatttcacacaaaatgttttgtttcaaaaaAGGTCATTGTACAATATCTGAAAttctgattttaataataaacaattaattcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31615 lncRNA upstream 252490 24554268 ~ 24564852 (+) True G25209
TU31605 lncRNA upstream 317753 24476487 ~ 24499589 (+) False AMCG00007640
TU31744 lncRNA downstream 17497 24879365 ~ 24911371 (+) True G25303
TU31742 lncRNA downstream 72611 24934479 ~ 24941580 (+) True G25302
TU31813 lncRNA downstream 91257 24953125 ~ 24953328 (+) True G25367
TU31861 lncRNA downstream 453919 25315787 ~ 25321025 (+) True G25405
TU31915 lncRNA downstream 589665 25451533 ~ 25451793 (+) True G25445
AMCG00007658 mRNA upstream 11854 24804508 ~ 24805488 (+) True AMCG00007658
AMCG00007659 mRNA upstream 18336 24795449 ~ 24799006 (+) True AMCG00007659
AMCG00007657 mRNA upstream 23601 24785292 ~ 24793741 (+) True AMCG00007657
AMCG00007660 mRNA upstream 34217 24781357 ~ 24783125 (+) True AMCG00007660
AMCG00007655 mRNA upstream 56053 24742934 ~ 24761289 (+) True AMCG00007655
AMCG00007665 mRNA downstream 120805 24982673 ~ 24984023 (+) True AMCG00007665
AMCG00007664 mRNA downstream 123129 24984997 ~ 24988135 (+) True AMCG00007664
AMCG00007663 mRNA downstream 153808 25015676 ~ 25035688 (+) True AMCG00007663
AMCG00007670 mRNA downstream 206193 25068061 ~ 25076698 (+) True AMCG00007670
AMCG00007669 mRNA downstream 279062 25140930 ~ 25170375 (+) True AMCG00007669
TU31514 other upstream 622861 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 1623821 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 2534384 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 3750559 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 5761209 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 3221954 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 3591141 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 4141227 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 4903960 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 10749248 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile