RNA id: TU31742


Basic Information

Item Value
RNA id TU31742
length 2515
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G25302
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24934479 ~ 24941580 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGAAtgtaagcaaacaaacagatgcAGGTCTGAAATTACATGTCATGGATAAGAGAAGAAAAGGACACAATTTATGTTATTGTggcattactttatttattaaacagacTGTAAGCTAAGTATTTACATTGtatgataaaataaagtgttaatatattgaacaaattgccaaaaaataataatacataactgATCAGCAGTAGAGATCAGTTACAACCAAGTTAATGAAATTCAATTCATATAGTTCAGACCGCAATGAATTTATGAATGTACAATTCAACTTCCAATCTAAAGTGTTGCAAACCATTACTGATACAGGCCTAAATGTATTCTCAGGAGAAAAAATCATTATTGAACATCAACATTTTATCATAAAGAGCAAAAGGGTTTATGACCGGTGCATTCATTAtcatagaaaaatattaaacagagaTTCACACAGCTTTCACAATCGGCTAAGCTTTAACACAGTGTTAACGATTTctaatattttagaaaaattaTGTTTGTAGTATATACTTTCATCTCTGCTCTGTAGTTTAGTCCAGAAGTGCAAAGATCTCTTTTGTGATGCATTTGCAGCATAAATACAATGTCTCCCTGCTTTGTACCATAATGCACCACGCTGTAAATGGACGGAGGTCATTATGCAAGCAGTTAATTATCCATCAATGTAGTGTTTCTTTAAACGGGGGAGGGAGTACAATTTCATCACACTAATGTGAAAGCAAtcacttcatatttttttccaacaccaaccaaattatttacaatatatatataaaaataaaaacaattactgaaatctgaataacaaaatcaattacCTTATAAGATGTACACATTCCTGTACTCACTTCCATGTTGGGTGCaggaaaaataacacaaagaggatttgttttattttgtagaagAGGGAATCTACAAAGGCTTAACAATCAAGAAAATAGAAGTGTTGAAAGAGTTCACGTAGAGACAAACTGAACAtagtttattattctttaacTAGACATGCATGGTGATTATAAAGCAAAGAACAGAAggcatttcaaagctttttcattgagtgcatttgtattttttctatttattcccccccctcgattaaataaaagcaaagttttgTTTGAAAGCATACgttaaatttcaaaaacaatctTATTATATTCCATTCCTATGTTAATTGCAGTGCACAATTTCAACTTCAATCCTTCATGTTAACACTAGTTAgcaaaagcttaaaaaaaatcttcaataaAGTGCTCTTTCACAGTTATGCTGCGGTGCATCTTGTTCCGGGACTGGAGATGCACCTTAAGTTGCACCTGATGTTGCTGCAGATCCCAGAGGTGACCATCAAATTTATACACCAATTAAAACTGTCACATAAAGATTGTCTGTACACAGGAGTTCACACACCGGGGCTTCTTCCAACTGCACCTGTTCTGCAAGGCTTTGCAAACGATCTGCACAGGACGCTTGATGTCAGCAAAAAGGGGCTTCGGTTAGGTTTATGATTTGAAAAGAGGATGTGGAGTAGACAATACTGGCTCTGGTCCCAGGACAGTTTTTAACAGAGTCCTGTTTTATAGGTTCTTACTCATAGCACTGAGTAGCCGTGGGGAGAGGAGGATGTGGTGATGGCTGGCCCCGTTAAAGTTGAAAGTGTTTGCCAGCCTGGAGataaaaaaaggcagttttactccaacttgcgtgaatccGGCAGTAGTGGCAGGGTTGAACATGGGGTGGCTGGCAGGGTTCTCTGAATCAACGTACCCTTCCGCGCTGTAGACAGACtcagtggcagcagcagcagtaatagcACCCACAACTCCTCCTATAAAGCCTGGCATGGCATGCAAGTTGTGTATGCCACAGGTGTCCTGAATATGGAGCTTAGACTCCAGGAAAGGTTATATAGATGTAGCCCAGCGTGGAGATGATACCACAGAAGAAACCCACGATCAGGCAGCCATAGGGCATCAGCATGAACTCAGCTGCAGTTCCCACGGCAACACCCCCGGCCAGTGTGGAATTCTGGATGTGCACCTGGAAGACCACACAGGCCGGGTCagagagaaaagacagacagagatggcTCTACATTCCCATAGAAGATAGGTTTGCATATATGTAATCCTAGCAATCCCACTATCCTGCATACACAGATGAAGGGTGCAGGATGCAGGTACCAACAGGCACAATTTAACTCCTGTACTGACAAACCTATGATGCAAgcctttcaaaatacattttctgcaatgGGACAGACACAGGAAAGTTCTGAGCTTCAGTAAGACTGTAACACTAGACCTAGACAAATGAAGGAATGGAGAGCAGTACCATGTCCAATTTGCCCTTCTTTTGTGTCAGACTGGAGATGGCCACTGTGGTGAGGACGCTTGCTGTCAGTGTCAAGTAAGTGTTGAGGGCGGCCCTGTGCTGCCCATCACCATGGGCTGAGGTGGCAGAGTTGAAACTGGGCCAGAACATCCAAAGGAAAAGTGTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31744 lncRNA upstream 23108 24879365 ~ 24911371 (+) True G25303
TU31739 lncRNA upstream 72611 24817342 ~ 24861868 (+) False G25300
TU31738 lncRNA upstream 72611 24820099 ~ 24861868 (+) True G25300
TU31615 lncRNA upstream 369627 24554268 ~ 24564852 (+) True G25209
TU31604 lncRNA upstream 434890 24491000 ~ 24499589 (+) False AMCG00007640
TU31813 lncRNA downstream 11545 24953125 ~ 24953328 (+) True G25367
TU31861 lncRNA downstream 374207 25315787 ~ 25321025 (+) True G25405
TU31915 lncRNA downstream 509953 25451533 ~ 25451793 (+) True G25445
TU32014 lncRNA downstream 1112121 26053701 ~ 26061246 (+) True G25531
TU32051 lncRNA downstream 1192781 26134361 ~ 26134577 (+) True G25561
AMCG00007658 mRNA upstream 128991 24804508 ~ 24805488 (+) True AMCG00007658
AMCG00007659 mRNA upstream 135473 24795449 ~ 24799006 (+) True AMCG00007659
AMCG00007657 mRNA upstream 140738 24785292 ~ 24793741 (+) True AMCG00007657
AMCG00007660 mRNA upstream 151354 24781357 ~ 24783125 (+) True AMCG00007660
AMCG00007655 mRNA upstream 173190 24742934 ~ 24761289 (+) True AMCG00007655
AMCG00007665 mRNA downstream 41093 24982673 ~ 24984023 (+) True AMCG00007665
AMCG00007664 mRNA downstream 43417 24984997 ~ 24988135 (+) True AMCG00007664
AMCG00007663 mRNA downstream 74096 25015676 ~ 25035688 (+) True AMCG00007663
AMCG00007670 mRNA downstream 126481 25068061 ~ 25076698 (+) True AMCG00007670
AMCG00007669 mRNA downstream 199350 25140930 ~ 25170375 (+) True AMCG00007669
TU31514 other upstream 739998 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 1740958 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 2651521 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 3867696 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 5878346 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 3142242 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 3511429 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 4061515 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 4824248 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 10669536 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile